View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13396_high_4 (Length: 463)
Name: NF13396_high_4
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13396_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 54 - 448
Target Start/End: Complemental strand, 52569380 - 52568985
Alignment:
| Q |
54 |
ataattaaactgcatcacctttgaattcaaaaatttcctttcttgaatgccaccaaatgatgtgacagaaacactcttgctattacactcaaatcgatca |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52569380 |
ataattcaactgcatcacctttgaattcaaaaatttcctttcttgaatgccaccaaatgatgtgacagaaacactcttgctattacactcaaatcgatca |
52569281 |
T |
|
| Q |
154 |
ta-catagtcatatttactaaaaacaatcggaacagnnnnnnncatgttcccggcacaaccatcaatcaattataagaaataagtacaaagaaatatttc |
252 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52569280 |
taacatagtcatatttactaaaaacaatcggaacagtttttttcgttttcccggcacaaccatcaatcaattataagaaataagtacaaagaaatatttc |
52569181 |
T |
|
| Q |
253 |
atgatctctgaatgaacaatgcaatcaaagaaatgaatattatttgaaattttaaatggtttcttgcaagttaaagaatcctgctagcttaataaggtat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52569180 |
atgatctctgaatgaacaatgcaatcaaagaaatgaatattatttgaaattttaaatggtttcttgcaagtaaaagaatcctgctagcttaataaggtat |
52569081 |
T |
|
| Q |
353 |
aacatttaaagaatcatgcgcaggtgccacacgggcaccttcatgaaagaaaaagctataaaaatgtgttaggcaatatatcgaacacgtgatatg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52569080 |
aacatttaaagaatcatgcgcaggtgccacacgggcaccttcataaaagaaaaagctataaaaatgtgttaggcaatatatcgaacacgtgatatg |
52568985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University