View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13396_high_7 (Length: 366)
Name: NF13396_high_7
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13396_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 34237821 - 34237474
Alignment:
| Q |
1 |
tcatcaaatcaaatgttgtatcaaacctatccaccaactgtagaattgtatggcgtttatttgaaccaaaatttttgagcaagttattactagttactag |
100 |
Q |
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| T |
34237821 |
tcataaaatcaaatgttgtatcaaacctatccaccaactgtagaattgtatggcgtttatttgaaccaaaattttagagcaagttattactagttactag |
34237722 |
T |
|
| Q |
101 |
ttatttgtttttgaactgtatggagcgtgcaacatttgaacgtgaaatattgttatttacagatgtgtcgtggtcgaggacagtgctataggtctagcag |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34237721 |
ttatttgtttttgaactgtatggagcgtgcaacttttgaacgtgaaatattgttatttacagatgtgtcgtggtcgaggacagtgctataggtctagcag |
34237622 |
T |
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| Q |
201 |
ctgctaaagcagctgggatgaagtgtatagtaacaaagagcgggtatatttctatttacgaaatggaaagcagctctatg-nnnnnnnnataggcagaga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34237621 |
ctgctaaagcagctgggatgaagtgtatagtaacaaagagcgggtatatttctatttacgaaatggaaagcagctctatgtttttatttataggcagaga |
34237522 |
T |
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| Q |
300 |
tgatagtaagttagtagttatgttagttattggtattgaattcgggat |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34237521 |
tgatagtaagttagtagttatgttagttattggtattgaattcgggat |
34237474 |
T |
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