View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13396_low_10 (Length: 345)
Name: NF13396_low_10
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13396_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 42468426 - 42468120
Alignment:
| Q |
21 |
actcaaactcttgacaattggaaatctcttcggggaataatacctgaacagaattaaccgtgactggtatgactgtctaatcgtcataatgctgccagta |
120 |
Q |
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| T |
42468426 |
actcgaactcttgacaattggaaatctctttggggaataatacctgaacagaattaaccgtgactggtatgactgtgtaatcgtcataatgctgccagta |
42468327 |
T |
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| Q |
121 |
ctgtgatactt-aagaataaaaattgatgtaataaaggtgtgactctttgttgttttccacatatctagtaattgttggcttctgttgttaattacgtaa |
219 |
Q |
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| T |
42468326 |
ctgtgatacttaaagaataaaaattgatgtaataaaagtgtgactccttgttgttttccaca-------taattgttggcttctgttgttaattatgtaa |
42468234 |
T |
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| Q |
220 |
gctagctacatattgatccgcatcacgcaggatgaaaataatataagcttcgttatgtatttcatccctacaaatatattgttactagtcaatatgtctt |
319 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42468233 |
gctagctacatattgacctgcatcacgcaggatgaaaataatataagcttcattatgtatttcatccctacaaatatattg-tactagtcaatatgtctt |
42468135 |
T |
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| Q |
320 |
ttccattaatgatga |
334 |
Q |
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|||||||||| |||| |
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| T |
42468134 |
ttccattaataatga |
42468120 |
T |
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