View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13396_low_13 (Length: 236)
Name: NF13396_low_13
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13396_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 21743496 - 21743291
Alignment:
| Q |
13 |
agcagagaaaagaggcttcaaggcttcaaactgtgaataggaaattgtctgcaatgaacaagttgttgatggaggaaaatgataggttgcagaaacaagt |
112 |
Q |
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| T |
21743496 |
agcagagaaaagaggcttcaaggcttcaaactgtgaataggaaattgtctgcaatgaacaagttgttgatggaggaaaatgataggttgcagaaacaagt |
21743397 |
T |
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| Q |
113 |
gtcacagcttgtgtgtgagaatggatttatgaggcaacaattgcatactgtaagtgtgtgaggaacatgtttcatgtcataattctacatttggtggagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21743396 |
gtcacagcttgtgtgtgagaatggatttatgaggcaacaattgcatactgtaagtgtgtgaggaacatgtttcatgtcataattctacatttggtggagg |
21743297 |
T |
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| Q |
213 |
caaaat |
218 |
Q |
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|||||| |
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| T |
21743296 |
caaaat |
21743291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 40313030 - 40313165
Alignment:
| Q |
8 |
ggaggagcagagaaaagaggcttcaaggcttcaaactgtgaataggaaattgtctgcaatgaacaagttgttgatggaggaaaatgataggttgcagaaa |
107 |
Q |
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|||| ||||||||||||||||||| |||||| | |||||| |||||| | ||||| ||||| ||| ||||||||||||||||||| ||| ||||||| |
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| T |
40313030 |
ggagaagcagagaaaagaggcttctcagcttcagagtgtgaacaggaaactttctgcgatgaataagctgttgatggaggaaaatgagaggctgcagaag |
40313129 |
T |
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| Q |
108 |
caagtgtcacagcttgtgtgtgagaatggatttatg |
143 |
Q |
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| T |
40313130 |
caggtttcacagctggtgaatgagaatggatttatg |
40313165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 43510961 - 43510857
Alignment:
| Q |
8 |
ggaggagcagagaaaagaggcttcaaggcttcaaactgtgaataggaaattgtctgcaatgaacaagttgttgatggaggaaaatgataggttgcagaaa |
107 |
Q |
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|||| ||||||||||||||||||||||| | ||| ||||||||||||| ||| ||| ||||| ||| || ||||||| || |||||||||||||||||| |
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| T |
43510961 |
ggagaagcagagaaaagaggcttcaaggttgcaagctgtgaataggaagttgagtgctatgaataagctgctgatggaagagaatgataggttgcagaaa |
43510862 |
T |
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| Q |
108 |
caagt |
112 |
Q |
| |
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||||| |
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| T |
43510861 |
caagt |
43510857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 11286795 - 11286670
Alignment:
| Q |
45 |
gtgaataggaaattgtctgcaatgaacaagttgttgatggaggaaaatgataggttgcagaaacaagtgtcacagcttgtgtgtgagaatggatttatga |
144 |
Q |
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||||||||||| |||||||||||||||||| | || ||||| || ||||| | ||||||| ||||| || || || || | ||||||||||| |||| |
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| T |
11286795 |
gtgaataggaagttgtctgcaatgaacaagctcttaatggaagagaatgaccgtctgcagaagcaagtttctcatctggtttatgagaatggatacatga |
11286696 |
T |
|
| Q |
145 |
ggcaacaattgcatactgtaagtgtg |
170 |
Q |
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|||||| | |||||||| |||||| |
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| T |
11286695 |
agcaacagattcatactgtgagtgtg |
11286670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 4336985 - 4337108
Alignment:
| Q |
13 |
agcagagaaaagaggcttcaaggcttcaaactgtgaataggaaattgtctgcaatgaacaagttgttgatggaggaaaatgataggttgcagaaacaagt |
112 |
Q |
| |
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|||||||||||||| ||| ||| | ||| |||||||||||| ||| | || ||||| ||| || |||||||||||||||||||||||||||| || || |
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| T |
4336985 |
agcagagaaaagagtctttcaggttgcaaggtgtgaataggaagttgacagccatgaataagctgctgatggaggaaaatgataggttgcagaagcaggt |
4337084 |
T |
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| Q |
113 |
gtcacagcttgtgtgtgagaatgg |
136 |
Q |
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||| || || |||| ||||||||| |
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| T |
4337085 |
gtctcacctggtgtatgagaatgg |
4337108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 51354582 - 51354702
Alignment:
| Q |
13 |
agcagagaaaagaggcttcaaggcttcaaactgtgaataggaaattgtctgcaatgaacaagttgttgatggaggaaaatgataggttgcagaaacaagt |
112 |
Q |
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||||||| ||||| ||| |||| | ||| ||||||| ||||| || | ||||||||||| || | ||||||||||||||||| |||||||||||||| |
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| T |
51354582 |
agcagaggaaagaagctggaaggttacaagctgtgaacaggaagttaacagcaatgaacaaactgcttatggaggaaaatgatagattgcagaaacaagt |
51354681 |
T |
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| Q |
113 |
gtcacagcttgtgtgtgagaa |
133 |
Q |
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|||||| ||||| | |||||| |
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| T |
51354682 |
gtcacaccttgtctatgagaa |
51354702 |
T |
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