View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13396_low_15 (Length: 220)
Name: NF13396_low_15
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13396_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 9987696 - 9987889
Alignment:
| Q |
14 |
tttgtatttttgctgttcttgagttgctgtttattaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacctgagta |
113 |
Q |
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| T |
9987696 |
tttgcatttttgctgttcttgagttgctgtttattaggactatatatcttattgggatctttggctagatttacacccttatgtattcaaaacctgagta |
9987795 |
T |
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| Q |
114 |
ctagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtgct |
207 |
Q |
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| T |
9987796 |
ctagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttttgtgct |
9987889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 14331096 - 14331287
Alignment:
| Q |
14 |
tttgtatttttgctgttcttgagttgctgtttattaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacctgagta |
113 |
Q |
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| T |
14331096 |
tttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacctgagta |
14331195 |
T |
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| Q |
114 |
ctagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtg |
205 |
Q |
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| T |
14331196 |
ctagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatttatgttgaactttgttgtgttttgtg |
14331287 |
T |
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Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 21724568 - 21724759
Alignment:
| Q |
14 |
tttgtatttttgctgttcttgagttgctgtttattaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacctgagta |
113 |
Q |
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| T |
21724568 |
tttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacctgagta |
21724667 |
T |
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| Q |
114 |
ctagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtg |
205 |
Q |
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| T |
21724668 |
ctagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatttatgttgaactttgttgtgttttgtg |
21724759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 21804289 - 21804480
Alignment:
| Q |
14 |
tttgtatttttgctgttcttgagttgctgtttattaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacctgagta |
113 |
Q |
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| T |
21804289 |
tttgcattttcgctgttcttgagttgttgtttatcaggactatatatcttattaggatctttggctagatttacacccttatgtattcaaaacctgagta |
21804388 |
T |
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| Q |
114 |
ctagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtagtttatgttgaactttgttgtgttctgtg |
205 |
Q |
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| T |
21804389 |
ctagaatgctaatttcttgaatggtgttgagatattttaacaaaataacgttgaactattgtaatttatgttgaactttgttgtgttttgtg |
21804480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 6061798 - 6061728
Alignment:
| Q |
85 |
tacacccttatgtattcaaaacctgagtactagaatgctaatttcttgaatggtgttgagatattttaaca |
155 |
Q |
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| T |
6061798 |
tacacccttatttattcaaaacctgagtactacaatgctaatttcttgaatggtgttgagatcttttaaca |
6061728 |
T |
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