View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13396_low_2 (Length: 604)

Name: NF13396_low_2
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13396_low_2
NF13396_low_2
[»] chr5 (6 HSPs)
chr5 (8-391)||(7669540-7669928)
chr5 (541-588)||(7670084-7670131)
chr5 (294-392)||(19459652-19459750)
chr5 (232-392)||(37523232-37523391)
chr5 (232-392)||(37563404-37563563)
chr5 (294-343)||(19131319-19131368)
[»] chr4 (5 HSPs)
chr4 (294-392)||(33634656-33634754)
chr4 (294-392)||(22523376-22523474)
chr4 (294-370)||(21295013-21295089)
chr4 (239-284)||(32038293-32038338)
chr4 (294-390)||(9392559-9392655)
[»] chr2 (2 HSPs)
chr2 (294-392)||(43973415-43973513)
chr2 (230-274)||(27577761-27577805)
[»] chr3 (3 HSPs)
chr3 (294-391)||(28405008-28405105)
chr3 (294-391)||(36841376-36841473)
chr3 (294-392)||(46250091-46250189)
[»] chr7 (2 HSPs)
chr7 (295-388)||(17040295-17040388)
chr7 (294-347)||(32228223-32228276)
[»] chr8 (3 HSPs)
chr8 (294-391)||(26802174-26802272)
chr8 (294-392)||(10011181-10011280)
chr8 (232-274)||(43141094-43141136)
[»] chr1 (2 HSPs)
chr1 (294-390)||(33299660-33299756)
chr1 (294-335)||(7412217-7412258)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 7669540 - 7669928
Alignment:
Q  8 agaagaagaagggaagtgacaccacacccgtcacggattcacatgtataagaaaataaaaacttataatcacacttaacat---aatcaaaggacaaact 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||| |||    
T  7669540 agaacaagaagggaagtgacaccacacccgtcacggattcacatgtataaaaaaataaaaacttataatcacacttaacatcataatcaaaggacagact 7669639  T
Q  105 caattaatcatcatattcctattcacatgtacaccgtgaggacaaagtctaaagaataaattcgaaaataaagagagaggaatagagtgagaccccattt 204  Q
    |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7669640 caattagttatcatattcctattcacatgtacatcgtgaggacaaagtctaaagaataaattcgaaaataaagagagaggaatagagtgaggccccattt 7669739  T
Q  205 gttttggnnnnnnnncttnnnnnnntaactttcttcatttttaagtgtttgtttagaatatttggaaaaaaatattttat--nnnnnnnnnctattttga 302  Q
    |||||||        |||       |||||||||||||||||||||||||||||||| | ||| |||||||| |||||||           |||||||||    
T  7669740 gttttggttttttttcttaaaaaaataactttcttcatttttaagtgtttgtttagattttttagaaaaaaacattttataaaaaaaaaaactattttga 7669839  T
Q  303 ccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactc 391  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||    
T  7669840 ccctaaaatgaaaagctattaagattaattctttttaaaatatgtctttttcaacaataaggaggtaatacatgtacatgttaaaactc 7669928  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 541 - 588
Target Start/End: Original strand, 7670084 - 7670131
Alignment:
Q  541 gactatatcatgttggttcttagtatttaagtcttactcatacaaata 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7670084 gactatatcatgttggttcttagtatttaagtcttactcatacaaata 7670131  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 294 - 392
Target Start/End: Original strand, 19459652 - 19459750
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactca 392  Q
    ||||||||| ||||||||||| |||||||| |||||  | || | ||||| |||| ||||||||||||||| ||||| || |||||| |||||||||||    
T  19459652 ctattttgatcctaaaatgaaaagctattaggattagcttttctcaaaatctatctttttcaacaacaaggaggtaacacgtgtacaagttaaaactca 19459750  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 392
Target Start/End: Complemental strand, 37523391 - 37523232
Alignment:
Q  232 actttcttcatttttaagtgtttgtttagaatatttggaaaaaaatattttatnnnnnnnnnctattttgaccctaaaatgaagagctattaagattaat 331  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||   |||||||         ||||||||| | ||||||||| |||||||| |||||      
T  37523391 acttttttcatttttaagtgtttgtttaggatttttagaaaaatc-attttatcaaaaacatctattttgatcataaaatgaaaagctattaggattagc 37523293  T
Q  332 tctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactca 392  Q
    | || | ||||| |||  ||||||||||||||| ||||| ||||||||| |||||||||||    
T  37523292 ttttctcaaaatctatttttttcaacaacaaggaggtaacacatgtacaagttaaaactca 37523232  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 392
Target Start/End: Complemental strand, 37563563 - 37563404
Alignment:
Q  232 actttcttcatttttaagtgtttgtttagaatatttggaaaaaaatattttatnnnnnnnnnctattttgaccctaaaatgaagagctattaagattaat 331  Q
    ||||| ||||||||||||||||||||||| || ||| ||||||   |||||||         ||||||||| | ||||||||| |||||||| |||||      
T  37563563 acttttttcatttttaagtgtttgtttaggatttttagaaaaatc-attttatcaaaaacatctattttgatcataaaatgaaaagctattaggattagc 37563465  T
Q  332 tctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactca 392  Q
    | || | ||||| |||  ||||||||||||||| ||||| ||||||||| |||||||||||    
T  37563464 ttttctcaaaatctatttttttcaacaacaaggaggtaacacatgtacaagttaaaactca 37563404  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 19131319 - 19131368
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaat 343  Q
    ||||||||||||||||||||| |||||||| |||||| | ||||||||||    
T  19131319 ctattttgaccctaaaatgaaaagctattaggattaactttttttaaaat 19131368  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 392
Target Start/End: Complemental strand, 33634754 - 33634656
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactca 392  Q
    ||||||||| ||||||||||| |||||||| |||||  | || ||||||| |||  ||||||||||||||| ||||| ||||||||| |||||||||||    
T  33634754 ctattttgatcctaaaatgaaaagctattaggattagcttttcttaaaatctatttttttcaacaacaaggaggtaacacatgtacaagttaaaactca 33634656  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 392
Target Start/End: Complemental strand, 22523474 - 22523376
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactca 392  Q
    ||||||||||||||||||||| |||||||  |||||  | || | ||||| |||  ||||||| ||||||| ||||| | ||||||| |||||||||||    
T  22523474 ctattttgaccctaaaatgaaaagctatttggattagcttttctcaaaatctatttttttcaaaaacaaggaggtaacaaatgtacaagttaaaactca 22523376  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 21295013 - 21295089
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaa 370  Q
    ||||||||||||||||||||| |||||||| |||||| | || ||||||| |||  ||||| | ||||||| |||||    
T  21295013 ctattttgaccctaaaatgaaaagctattaggattaacttttcttaaaatctatttttttctaaaacaaggaggtaa 21295089  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 32038338 - 32038293
Alignment:
Q  239 tcatttttaagtgtttgtttagaatatttggaaaaaaatattttat 284  Q
    ||||||||||||||||||||||||| ||| ||| ||| ||||||||    
T  32038338 tcatttttaagtgtttgtttagaatttttagaacaaattattttat 32038293  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 9392655 - 9392559
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaact 390  Q
    ||||||||||  ||||||||| |||||||| |||||  | || | ||||| |||  ||||||||||||| | | ||| |||||||||||||| ||||    
T  9392655 ctattttgacattaaaatgaaaagctattaggattagcttttctcaaaatttatttttttcaacaacaaagagataacacatgtacatgttagaact 9392559  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 294 - 392
Target Start/End: Original strand, 43973415 - 43973513
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactca 392  Q
    ||||||||||||||||||||  |||||||| |||||  | || | ||||| |||  ||||||| ||||||| ||||| |||||||||||||||||||||    
T  43973415 ctattttgaccctaaaatgagaagctattaggattagcttttctcaaaatctatttttttcaaaaacaaggaggtaacacatgtacatgttaaaactca 43973513  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 27577761 - 27577805
Alignment:
Q  230 taactttcttcatttttaagtgtttgtttagaatatttggaaaaa 274  Q
    ||||||| ||||||||||||||||||||||| || ||| ||||||    
T  27577761 taacttttttcatttttaagtgtttgtttaggatttttagaaaaa 27577805  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 28405105 - 28405008
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactc 391  Q
    ||||||||||||||||||||| |||||||| |||||  | || | ||| | |||  ||||||| ||||||| ||||| ||||||||||||||||||||    
T  28405105 ctattttgaccctaaaatgaaaagctattaggattagcttttctcaaattctatttttttcaaaaacaaggaggtaacacatgtacatgttaaaactc 28405008  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 36841473 - 36841376
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactc 391  Q
    |||||| || ||||||||||| |||| ||| |||||| | || | ||||| |||  ||||||||||||||| | ||| ||||||||| ||||||||||    
T  36841473 ctatttggatcctaaaatgaaaagctgttaggattaacttttctcaaaatctatttttttcaacaacaaggagataacacatgtacaagttaaaactc 36841376  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 392
Target Start/End: Complemental strand, 46250189 - 46250091
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaactca 392  Q
    ||||||||||| ||||||||| |||||||| |||||  | || | ||||| |||  ||||||| ||||||| ||||   |||||||| |||||||||||    
T  46250189 ctattttgaccataaaatgaaaagctattaggattaccttttctcaaaatctatttttttcaaaaacaaggaggtagctcatgtacaagttaaaactca 46250091  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 17040388 - 17040295
Alignment:
Q  295 tattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaa 388  Q
    |||||| ||||||||||||| |||||||| |||||| | || ||||||| |||  ||||||| ||||||| ||||| ||||| ||| |||||||    
T  17040388 tattttaaccctaaaatgaaaagctattaggattaacttttcttaaaatctatttttttcaaaaacaaggaggtaacacatgaacaagttaaaa 17040295  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 32228276 - 32228223
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatat 347  Q
    ||||||||| ||||||||||| |||||||| ||||| || ||||||||||||||    
T  32228276 ctattttgatcctaaaatgaaaagctattaggattatttttttttaaaatatat 32228223  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 391
Target Start/End: Original strand, 26802174 - 26802272
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatata-tccttttcaacaacaaggcggtaatacatgtacatgttaaaactc 391  Q
    ||||||||||||||||||||| |  ||||| |||||| | |||| ||||| || |  ||||||| ||||||| ||||| ||||||||| ||||||||||    
T  26802174 ctattttgaccctaaaatgaaaatttattaggattaacttttttcaaaatttattatttttcaaaaacaaggaggtaagacatgtacaagttaaaactc 26802272  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 392
Target Start/End: Complemental strand, 10011280 - 10011181
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatata-tccttttcaacaacaaggcggtaatacatgtacatgttaaaactca 392  Q
    ||||||||||||||||||||| |||||||| |||||  | || | ||||| || |  ||||||||||||||  ||||| ||||||| | |||||||||||    
T  10011280 ctattttgaccctaaaatgaaaagctattaggattagcttttctcaaaatctattttttttcaacaacaagaaggtaacacatgtataagttaaaactca 10011181  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 43141094 - 43141136
Alignment:
Q  232 actttcttcatttttaagtgtttgtttagaatatttggaaaaa 274  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||    
T  43141094 acttttttcatttttaagtgtttgtttagaatttttagaaaaa 43141136  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 33299756 - 33299660
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctttttaaaatatatccttttcaacaacaaggcggtaatacatgtacatgttaaaact 390  Q
    ||||||||||||||||||||| |||||||| ||||| || || | ||||| ||   ||||||||||||||| | ||| | |||| ||||||| ||||    
T  33299756 ctattttgaccctaaaatgaaaagctattaggattagtttttctcaaaatctacttttttcaacaacaaggagataacatatgtgcatgttagaact 33299660  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 7412258 - 7412217
Alignment:
Q  294 ctattttgaccctaaaatgaagagctattaagattaattctt 335  Q
    ||||||||||||||||||||| |||||||| ||||| |||||    
T  7412258 ctattttgaccctaaaatgaaaagctattaggattagttctt 7412217  T

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