View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13396_low_3 (Length: 513)
Name: NF13396_low_3
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13396_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 4042474 - 4041968
Alignment:
| Q |
1 |
cagtttaacttggcaaaattgtgtaacttgaaatgt--taattaaggtacttttggaatagggcttaatcaaaaccataaaaagtacagaacttcagaga |
98 |
Q |
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| T |
4042474 |
cagtttaacttagcaaaattgtgtaacttgaaatgtgttaattaaggtacttttggaatagggcttaatcaaaaccataaaaagtatagaacttcagaga |
4042375 |
T |
|
| Q |
99 |
aactttggatttaaaagtgaactgacannnnnnnnnnaaaattaaaaagattccataaaaatcttcatatctgagagttattttgtgaaatgaaaatgat |
198 |
Q |
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| T |
4042374 |
aactttggatttaaaagtgaa-tgacatttttttttataaattaaataggttccataaaaatcttcatatctgaaagttattttgtgaaatgaaaataat |
4042276 |
T |
|
| Q |
199 |
ttaaacacctttaacttcgcacttcaaatatgactgaaaatggtgtttgaaactcatccacggtggtgtgacagtggctctctcgcgaaggtgcccaaaa |
298 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| | |||||||||| |||||| |||||||| |||||||||||||| |
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| T |
4042275 |
ttaaacacctttaacttcgtacttcaaataggactgaaaatggtgtttgaaattcacctacggtggtgttacagtgactctctcgtgaaggtgcccaaaa |
4042176 |
T |
|
| Q |
299 |
tacaataagcaataaataagagagattttacgatgaggaacactgatcctacatttaagactcatctctattttacgtagaagttaggttttttcaatat |
398 |
Q |
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| T |
4042175 |
tacaataagtaataaataagagagattttacgatgaggaacattgatcctacgtttaagactcgtctctattttacgtagaagttaggttttttcaatat |
4042076 |
T |
|
| Q |
399 |
cttaacggaacactctatttgtttttgagaaataagataatctatgcttaaaaatatatatttcataaacccatgtaatttatttagtttttggtatcat |
498 |
Q |
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| T |
4042075 |
cgtaacggaacactctatttgtttttgagaaataagataatctatgcttaaaaatatatatttcataaacccatataatttatttagtttttggtatcat |
4041976 |
T |
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| Q |
499 |
tcatctca |
506 |
Q |
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|||||||| |
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| T |
4041975 |
tcatctca |
4041968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 4118448 - 4118507
Alignment:
| Q |
64 |
taatcaaaaccataaaaa-gtacagaacttcagagaaactttggatttaaaagtgaactg |
122 |
Q |
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| T |
4118448 |
taatcaaaaccataaaaatgtatagaacttcggaggaaatttggatttaaaagtgaactg |
4118507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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