View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13397_high_2 (Length: 357)
Name: NF13397_high_2
Description: NF13397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13397_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 42142037 - 42141708
Alignment:
| Q |
17 |
cttatcacagttctcgaagctttaaagtcatgataattaataacaatggtttggctttaatatatgatcagagttctgtgaggtctataatatgtaaggc |
116 |
Q |
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| T |
42142037 |
cttatcacagttctcgaagctttaaagtcatgataattaataacaatggtttggctttaatatatgatcagagttctgtgaggtctataatatgtaaggc |
42141938 |
T |
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| Q |
117 |
aaaaataggctttcctttttctgtacctatgctatataatttgcacaccctatacatgtgtttgtcttactgaattttattacatactatactatagatt |
216 |
Q |
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| T |
42141937 |
aaaaataggctttcctttttctgtacctatgctatacaatttgcacaccctatacatgtgtttgtcttactgaattttattacatactatactat--act |
42141840 |
T |
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| Q |
217 |
actagattattaatatgagtaacta--gtgtttaatgtatagttggaattatgtagtagcattagtcacaactttgggaggctattaaatattataggta |
314 |
Q |
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| T |
42141839 |
a-tagattattaatatgagtaactagtgtgtttaatgtatagttggaattatgtagtagcattagtcacaactttgggaggctattaaatattataggta |
42141741 |
T |
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| Q |
315 |
gttgaagagaataattgaattttattagtataa |
347 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42141740 |
gttgaagagaataattgaattttattagtataa |
42141708 |
T |
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