View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13397_low_1 (Length: 949)

Name: NF13397_low_1
Description: NF13397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13397_low_1
NF13397_low_1
[»] chr3 (7 HSPs)
chr3 (666-932)||(41415603-41415869)
chr3 (670-791)||(55447916-55448037)
chr3 (778-896)||(55447779-55447896)
chr3 (666-773)||(24565333-24565440)
chr3 (339-445)||(17775581-17775688)
chr3 (339-445)||(19076882-19076989)
chr3 (381-495)||(896984-897098)
[»] chr4 (8 HSPs)
chr4 (695-925)||(41418273-41418503)
chr4 (372-495)||(40087718-40087841)
chr4 (689-780)||(45355251-45355342)
chr4 (689-780)||(45368992-45369083)
chr4 (372-473)||(21201063-21201164)
chr4 (379-483)||(27258210-27258314)
chr4 (685-784)||(49525807-49525906)
chr4 (411-495)||(35945767-35945852)
[»] chr2 (5 HSPs)
chr2 (292-495)||(15827858-15828061)
chr2 (18-158)||(15827582-15827722)
chr2 (564-669)||(15828960-15829065)
chr2 (339-490)||(15826336-15826487)
chr2 (377-444)||(42294800-42294867)
[»] chr6 (4 HSPs)
chr6 (403-490)||(25461763-25461850)
chr6 (380-478)||(25436753-25436851)
chr6 (661-752)||(7968364-7968452)
chr6 (379-483)||(29178727-29178831)
[»] chr7 (6 HSPs)
chr7 (564-665)||(37383353-37383455)
chr7 (379-495)||(6240017-6240133)
chr7 (665-773)||(36366864-36366972)
chr7 (666-773)||(46194021-46194128)
chr7 (376-495)||(14585436-14585555)
chr7 (376-495)||(15999306-15999425)
[»] chr1 (3 HSPs)
chr1 (381-495)||(39311806-39311920)
chr1 (666-773)||(6813374-6813481)
chr1 (378-495)||(25291928-25292045)
[»] scaffold0009 (1 HSPs)
scaffold0009 (668-773)||(18796-18901)
[»] chr5 (1 HSPs)
chr5 (689-786)||(17902241-17902338)
[»] chr8 (2 HSPs)
chr8 (374-464)||(8120809-8120899)
chr8 (675-780)||(8037860-8037962)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 666 - 932
Target Start/End: Original strand, 41415603 - 41415869
Alignment:
Q  666 taagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttc 765  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41415603 taagggggcgtttgtttcccctctacaaaataagttcctgggaatgtaagatgggaactatttattgcaatgtttggtacacatgcatacaaaaaggttc 41415702  T
Q  766 caaggaattaattatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacat 865  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41415703 caaggaattaattatacccggtaattatttttaactatattctcccattttttattcccagcacaaaggatgggaatgacttattcccagcggttaacat 41415802  T
Q  866 ccattaatatctcaaaagttcatttctaccccttgtaaccgcatggcatcccacgtttctccctact 932  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41415803 ccattaatatctcaaaagttcatttctaccccttgtaaccgcatggcatcccacgtttctacctact 41415869  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 670 - 791
Target Start/End: Complemental strand, 55448037 - 55447916
Alignment:
Q  670 ggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttccaag 769  Q
    |||||||||||||| | |||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||  |||    
T  55448037 ggggcgtttgtttcacttctacaaaataagtttctgagaatgtaagataggaactatttattccaatgtttgatacacatgcataaaaaaaggttataag 55447938  T
Q  770 gaattaattatacccggtaatt 791  Q
    ||||||||||||||||||||||    
T  55447937 gaattaattatacccggtaatt 55447916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 778 - 896
Target Start/End: Complemental strand, 55447896 - 55447779
Alignment:
Q  778 tatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccatt-aatatc 876  Q
    |||||||| |||||||||| ||||||  |||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||| ||    
T  55447896 tatacccgataattattttcaactat--tatcccattttttattcccaacccaaaggatgggaatcacttattcccagcggttaacatccattaaatgtc 55447799  T
Q  877 tcaaaagttcatttctaccc 896  Q
     ||||| |||||||||||||    
T  55447798 acaaaatttcatttctaccc 55447779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 666 - 773
Target Start/End: Original strand, 24565333 - 24565440
Alignment:
Q  666 taagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttc 765  Q
    |||||||| ||||||||| |||||  ||||||  ||||| ||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||  |||    
T  24565333 taagggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgggaattatttattcctatgtttggtatacatgcatacaaaaatattc 24565432  T
Q  766 caaggaat 773  Q
    ||||||||    
T  24565433 caaggaat 24565440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 17775688 - 17775581
Alignment:
Q  339 tgatactcgaaaaatagctacct-ttctctaaggcatacaaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacg 437  Q
    |||| |||||||| ||| ||||| ||||| || |||||||||||||||||||||||||| || |||||||| ||| |||| ||||||||||||||| |||    
T  17775688 tgatgctcgaaaagtagttacctattctccaaagcatacaaagtgcaagtatacattgtcgcaacaagtaataaaaagtaagtagagtatcgatcctacg 17775589  T
Q  438 acgattgt 445  Q
    | ||||||    
T  17775588 aggattgt 17775581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 19076989 - 19076882
Alignment:
Q  339 tgatactcgaaaaatagctacct-ttctctaaggcatacaaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacg 437  Q
    |||| |||||||| ||| ||||| ||||| || |||||||||||||||||||||||||| || |||||||| ||| |||| ||||||||||||||| |||    
T  19076989 tgatgctcgaaaagtagttacctattctccaaagcatacaaagtgcaagtatacattgtcgcaacaagtaataaaaagtaagtagagtatcgatcctacg 19076890  T
Q  438 acgattgt 445  Q
    | ||||||    
T  19076889 aggattgt 19076882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 381 - 495
Target Start/End: Complemental strand, 897098 - 896984
Alignment:
Q  381 tgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaagt 480  Q
    |||||||||||| | | || |||||||| |||||||| ||| ||||| |||| || || |||| ||  ||||||| |||||| | ||| |||| | ||||    
T  897098 tgcaagtatacactatcgcaacaagtaataaagagtaagtaaagtattgatctcatgaggattttcgtggataagctctaagaattttcaaatgccaagt 896999  T
Q  481 ttaattatttgagat 495  Q
    |||||||||| ||||    
T  896998 ttaattatttaagat 896984  T

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Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 695 - 925
Target Start/End: Complemental strand, 41418503 - 41418273
Alignment:
Q  695 ttaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttccaaggaattaattatacccggtaattatt 794  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  41418503 ttaagttcctgggaatgtaagatgggaactatttattccaatatttggtacacatgcatacaaaaaggttccaagaaattaattatatccggtaattatt 41418404  T
Q  795 tttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccattaatatctcaaaagttcatttctac 894  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  41418403 tttaactatattatcccatattttattcccaacagaaaggatgggaatgacttattccaagcagttaacatccattaatatctcaaaagttcatttctac 41418304  T
Q  895 cccttgtaaccgcatggcatcccacgtttct 925  Q
    ||||||||||||||||||||||||| |||||    
T  41418303 cccttgtaaccgcatggcatcccacatttct 41418273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 372 - 495
Target Start/End: Original strand, 40087718 - 40087841
Alignment:
Q  372 catacaaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaa 471  Q
    |||||||||||||||| || ||||| || | |||||| ||||| || ||||||||| |||||||||| ||||| |  |||||||||||||||||||| ||    
T  40087718 catacaaagtgcaagtgtatattgtcgcaataagtaataaagaataagtagagtattgatcccacgaagattgccgtggataagttctaagtactttcaa 40087817  T
Q  472 atactaagtttaattatttgagat 495  Q
    ||||||||||||||||||| ||||    
T  40087818 atactaagtttaattatttaagat 40087841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 689 - 780
Target Start/End: Original strand, 45355251 - 45355342
Alignment:
Q  689 tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttccaaggaattaattat 780  Q
    |||||||| | ||||  ||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||  ||||||||||| ||||||    
T  45355251 tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat 45355342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 689 - 780
Target Start/End: Original strand, 45368992 - 45369083
Alignment:
Q  689 tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttccaaggaattaattat 780  Q
    |||||||| | ||||  ||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||  ||||||||||| ||||||    
T  45368992 tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat 45369083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 372 - 473
Target Start/End: Original strand, 21201063 - 21201164
Alignment:
Q  372 catacaaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaa 471  Q
    |||||| |||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||| || ||||| |   ||||||||||| ||| ||| ||    
T  21201063 catacagagtgcaagtatatattgtcgcaacaagtaataaagagtaagtagagtatcgatcccatgaggattgccgtagataagttctatgtattttcaa 21201162  T
Q  472 at 473  Q
    ||    
T  21201163 at 21201164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 483
Target Start/End: Original strand, 27258210 - 27258314
Alignment:
Q  379 agtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaa 478  Q
    ||||||| |||| ||||| || |||||||| |||||||| ||||||||||||||||| || ||||| |   ||||||||||| ||| ||| ||||  |||    
T  27258210 agtgcaattatatattgtcgcaacaagtaataaagagtaagtagagtatcgatcccatgaggattgccgtagataagttctatgtattttcaaatgttaa 27258309  T
Q  479 gttta 483  Q
    |||||    
T  27258310 gttta 27258314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 685 - 784
Target Start/End: Original strand, 49525807 - 49525906
Alignment:
Q  685 cctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttccaaggaattaattataccc 784  Q
    |||||||||| ||||||||   |||||||||||||||| |||||| ||  ||||||| || ||||  | |||||||  ||| ||||||||||||||||||    
T  49525807 cctctacaaactaagttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattataccc 49525906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 495
Target Start/End: Complemental strand, 35945852 - 35945767
Alignment:
Q  411 aagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaagttt-aattatttgagat 495  Q
    ||||||| ||| ||||||||||||||   |||| ||   |||||||| |||||| ||| ||||||||||||| |||||||||||||    
T  35945852 aagagtaagtaaagtatcgatcccacagggattatcgtagataagttttaagtattttcaaatactaagtttaaattatttgagat 35945767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 3e-94; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 292 - 495
Target Start/End: Original strand, 15827858 - 15828061
Alignment:
Q  292 aacttagaataaaccacttaacaatctccgaaaacgactcaaaaatttgatactcgaaaaatagctacctttctctaaggcatacaaagtgcaagtatac 391  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15827858 aacttagaataaaccacttaacaatctccggaaaagacgcaaaaatttgatgctcgaaaaatagctacctttctctaaggcatataaagtgcaagtatac 15827957  T
Q  392 attgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaagtttaattatttg 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  15827958 attgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcgaggataagttctaagtacttttaaatactaggtttaattatttg 15828057  T
Q  492 agat 495  Q
    ||||    
T  15828058 agat 15828061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 15827582 - 15827722
Alignment:
Q  18 acattttgtattttgatggacatgaaannnnnnncattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtggctaaaaaggtctt 117  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15827582 acattttgtattttgatggacatgaaatttgtttcattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtggctgaaaaggtctt 15827681  T
Q  118 gctttcaaatagttaaaatagcaatccataactaggagtga 158  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15827682 gctttcaaatagttaaaatagcaatccataactaggagtga 15827722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 564 - 669
Target Start/End: Original strand, 15828960 - 15829065
Alignment:
Q  564 aagcaatcatttagtacataaagcattcaacacatacaattaaagattgaagggaaaagacattaaatcgtagaactagaaattggcattaaaataaaac 663  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15828960 aagcaatcgtttagtacataaagcattcaacacatacaattaaagattggagggaaaagacattaaatcgtagaacaagaaattggcattaaaataaaac 15829059  T
Q  664 cttaag 669  Q
    ||||||    
T  15829060 cttaag 15829065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 339 - 490
Target Start/End: Original strand, 15826336 - 15826487
Alignment:
Q  339 tgatactcgaaaaatagctacct-ttctctaaggcatacaaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacg 437  Q
    |||| |||||||||||| ||||| |||||  | ||||| |||||||||||||||| ||| || |||||||  ||||| || ||||||||||||||| |||    
T  15826336 tgatgctcgaaaaatagttacctattctccgatgcata-aaagtgcaagtatacactgtcgctacaagtattaaagactaagtagagtatcgatcctacg 15826434  T
Q  438 acgattgtcaaggataagttctaagtacttttaaatactaagtttaattattt 490  Q
    |  ||||||  ||||||||| |||||||||| |||||||||||||||||||||    
T  15826435 agaattgtcgtggataagttataagtactttcaaatactaagtttaattattt 15826487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 42294800 - 42294867
Alignment:
Q  377 aaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattg 444  Q
    |||||||||||||||| |||||  |||||||| |||||||| ||||||||||||||| |||| |||||    
T  42294800 aaagtgcaagtatacactgttgtaacaagtaataaagagtaagtagagtatcgatccgacgaggattg 42294867  T

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Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 403 - 490
Target Start/End: Original strand, 25461763 - 25461850
Alignment:
Q  403 aagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaagtttaattattt 490  Q
    |||||| |||||||| || ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  25461763 aagtaataaagagtaagtggagtatcgatcccacgaggattgacatggataagttctaagtactttcaaatactaagtttaattattt 25461850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 380 - 478
Target Start/End: Original strand, 25436753 - 25436851
Alignment:
Q  380 gtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaa 478  Q
    ||||||||||||||||| || |||||| | |||||||| ||| |||||||||||||||| ||||||   |||||||||||||||||||| |||||||||    
T  25436753 gtgcaagtatacattgtcgcaacaagtgataaagagtaagtatagtatcgatcccacgaggattgttgtggataagttctaagtactttcaaatactaa 25436851  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 661 - 752
Target Start/End: Original strand, 7968364 - 7968452
Alignment:
Q  661 aaccttaagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgca 752  Q
    |||||| |||||||||||||||| ||| |||||||||| ||||   |||| |||||||||||  ||||||||| ||||||| ||||||||||    
T  7968364 aacctttagggggcgtttgtttcacctatacaaattaaattcc---gaatctaagatgggaataatttattcccatgtttgatacacatgca 7968452  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 379 - 483
Target Start/End: Original strand, 29178727 - 29178831
Alignment:
Q  379 agtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaa 478  Q
    |||||| ||||||| ||| || | |||||| |||||| | ||||| |||||||||||||| |||||    |||||||||||||||| ||| |||||||||    
T  29178727 agtgcaggtatacactgtcgcaataagtaataaagagcaagtagaatatcgatcccacgaggattgaagtggataagttctaagtattttcaaatactaa 29178826  T
Q  479 gttta 483  Q
    |||||    
T  29178827 gttta 29178831  T

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Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 564 - 665
Target Start/End: Original strand, 37383353 - 37383455
Alignment:
Q  564 aagcaatcatttagtacataaagcattcaacacatacaattaaagattga-agggaaaagacattaaatcgtagaactagaaattggcattaaaataaaa 662  Q
    |||||| | ||||||||||||||| |||||||||||||||| |||||||| | ||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  37383353 aagcaagcctttagtacataaagctttcaacacatacaattgaagattgacaaggaaaagacattaaatcatagaacatgaaattgacattaaaataaaa 37383452  T
Q  663 cct 665  Q
    |||    
T  37383453 cct 37383455  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 379 - 495
Target Start/End: Complemental strand, 6240133 - 6240017
Alignment:
Q  379 agtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaa 478  Q
    |||| ||||||| | ||| || |||||||| |||||||| ||||| ||||||||||| || |||||||  |||||||||||||||| |||||||| ||||    
T  6240133 agtggaagtataaactgtcgcaacaagtaataaagagtaagtagaatatcgatcccatgaggattgtcgtggataagttctaagtatttttaaatgctaa 6240034  T
Q  479 gtttaattatttgagat 495  Q
    |||||||||||| ||||    
T  6240033 gtttaattatttaagat 6240017  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 665 - 773
Target Start/End: Complemental strand, 36366972 - 36366864
Alignment:
Q  665 ttaagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggtt 764  Q
    ||||||||| ||||||||| ||||   ||||||  ||||| ||||| ||||||| ||| |||||||||| |||||||||| |||||||||||||||  ||    
T  36366972 ttaagggggtgtttgtttcacctcagtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaatatt 36366873  T
Q  765 ccaaggaat 773  Q
     ||||||||    
T  36366872 tcaaggaat 36366864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 666 - 773
Target Start/End: Complemental strand, 46194128 - 46194021
Alignment:
Q  666 taagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttc 765  Q
    |||||||  ||||||||| |||||  ||||||  ||| | ||||| ||||||||||| |||||||||  |||||||||| |||||||||||||||  |||    
T  46194128 taaggggatgtttgtttcacctctgtaaattagattcttaggaatctaagatgggaattatttattcttatgtttggtatacatgcatacaaaaatattc 46194029  T
Q  766 caaggaat 773  Q
    ||||||||    
T  46194028 caaggaat 46194021  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 14585436 - 14585555
Alignment:
Q  376 caaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatac 475  Q
    ||||||||||||||||||| | |  |||||||| |||||||| ||| |||||||||||||| | | |||    ||||||||| |||||| ||| |||| |    
T  14585436 caaagtgcaagtatacattatcgatacaagtaataaagagtaagtaaagtatcgatcccacaaaggttggagtggataagttataagtattttcaaatgc 14585535  T
Q  476 taagtttaattatttgagat 495  Q
    ||||| || |||||| ||||    
T  14585536 taagtatagttatttaagat 14585555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 15999306 - 15999425
Alignment:
Q  376 caaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatac 475  Q
    ||||||||||||||||||| | |  | || ||| |||||||| ||| |||||| ||||||||| | |||  | ||||||||| |||||| ||| |||| |    
T  15999306 caaagtgcaagtatacattatcgatataaataataaagagtaagtaaagtatcaatcccacgaaggttggaatggataagttataagtattttcaaatgc 15999405  T
Q  476 taagtttaattatttgagat 495  Q
    |||||||| |||||| ||||    
T  15999406 taagtttagttatttaagat 15999425  T

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Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 381 - 495
Target Start/End: Original strand, 39311806 - 39311920
Alignment:
Q  381 tgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatactaagt 480  Q
    |||||||||||||||| |  |||| ||| ||| |||| ||||| |||||||| ||||| |||||||  |||||||||||||||| ||| ||| |||||||    
T  39311806 tgcaagtatacattgtcgtaacaaataataaaaagtaagtagaatatcgatctcacgaggattgtcgtggataagttctaagtattttcaaacactaagt 39311905  T
Q  481 ttaattatttgagat 495  Q
    |||||||||| ||||    
T  39311906 ttaattatttaagat 39311920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 666 - 773
Target Start/End: Complemental strand, 6813481 - 6813374
Alignment:
Q  666 taagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttc 765  Q
    |||||||| ||||||||| |||||  ||||||  ||||| ||||| ||||||| ||| |||||||||| |||||||||| |||||||||||||||  ||     
T  6813481 taagggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaatattt 6813382  T
Q  766 caaggaat 773  Q
    ||||||||    
T  6813381 caaggaat 6813374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 495
Target Start/End: Complemental strand, 25292045 - 25291928
Alignment:
Q  378 aagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagtacttttaaatacta 477  Q
    ||||| ||||||||||||| || |||||||| ||||||||  || ||||| |||||||||| |||||    ||| |  || |||||| ||| ||||||||    
T  25292045 aagtggaagtatacattgtcgcaacaagtaataaagagtaaataaagtattgatcccacgaggattggagtggacagattttaagtattttcaaatacta 25291946  T
Q  478 agtttaattatttgagat 495  Q
    |||||| |||||| ||||    
T  25291945 agtttagttatttaagat 25291928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 668 - 773
Target Start/End: Complemental strand, 18901 - 18796
Alignment:
Q  668 agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttcca 767  Q
    |||||| ||||||||| |||||  ||||||  ||||| ||||| |||| |||||| |||||||||| |||||||||| |||||||||||||||  ||| |    
T  18901 agggggtgtttgtttcacctctgtaaattagattcctaggaatctaaggtgggaattatttattcctatgtttggtatacatgcatacaaaaatattcaa 18802  T
Q  768 aggaat 773  Q
    ||||||    
T  18801 aggaat 18796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 689 - 786
Target Start/End: Complemental strand, 17902338 - 17902241
Alignment:
Q  689 tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttccaaggaattaattatacccgg 786  Q
    |||||||| | ||||  ||||| ||||||||||| |||||||||| |||||||||| ||||||| |||||||  ||||| ||||| |||||| |||||    
T  17902338 tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccagggaatgaattattcccgg 17902241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 374 - 464
Target Start/End: Complemental strand, 8120899 - 8120809
Alignment:
Q  374 tacaaagtgcaagtatacattgttgcgacaagtaacaaagagtatgtagagtatcgatcccacgacgattgtcaaggataagttctaagta 464  Q
    ||||| ||||||||||||| | |  | |||||||| |||||||| || ||||||||||||||| | |||| ||| |||||||||| |||||    
T  8120899 tacaatgtgcaagtatacactatcacaacaagtaataaagagtaagttgagtatcgatcccacaaggattatcatggataagttcaaagta 8120809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 780
Target Start/End: Original strand, 8037860 - 8037962
Alignment:
Q  675 gtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttccaaggaatt 774  Q
    ||||||||| |||| | ||||| | ||||  ||||| |||||||||||   |||||||| |||||||| | ||||||| |||||||  || |||||||||    
T  8037860 gtttgtttcacctccaaaaatttaattcccaggaatttaagatgggaa---tttattcccatgtttggcagacatgcacacaaaaatatttcaaggaatt 8037956  T
Q  775 aattat 780  Q
    ||||||    
T  8037957 aattat 8037962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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