View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13397_low_6 (Length: 228)
Name: NF13397_low_6
Description: NF13397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13397_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 8544095 - 8544291
Alignment:
| Q |
23 |
agaaggtaatttaatactccttccttccttcactatttatcattcattca----cttcaacttatgtttattgcttctgcgccaggatcctctatgc--- |
115 |
Q |
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| T |
8544095 |
agaaggtaatttaatactccttcattccttcactatttatcattcattcattcacttcaacttatgtttattgcttctgcgccaggatcttctatgcaaa |
8544194 |
T |
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| Q |
116 |
---aaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttactgctccattttgctaatacaaccccccactcattatc |
209 |
Q |
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| T |
8544195 |
tgcaaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttactgctccattttgctaatacaaccccccactcattatc |
8544291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 8609334 - 8609530
Alignment:
| Q |
23 |
agaaggtaatttaatactccttccttccttcactatttatcattcattca----cttcaacttatgtttattgcttctgcgccaggatcctctatgc--- |
115 |
Q |
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| T |
8609334 |
agaaggtaatttaatactccttcattccttcactatttatcattcattcattcacttcaacttatgtttattgcttctgcgccaggatcttctatgcaaa |
8609433 |
T |
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| Q |
116 |
---aaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttactgctccattttgctaatacaaccccccactcattatc |
209 |
Q |
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| T |
8609434 |
tgcaaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttactgctccattttgctaatacaaccccccactcattatc |
8609530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 25014527 - 25014599
Alignment:
| Q |
101 |
caggatcctctatgcaaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttact |
173 |
Q |
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| T |
25014527 |
caggatcgtctgtgcaactgcaaatagtcaaggcactccactccggtgagagaaaaaaggcttcccacttact |
25014599 |
T |
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