View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13398_high_2 (Length: 445)
Name: NF13398_high_2
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13398_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 34275655 - 34276065
Alignment:
| Q |
1 |
gaaaatcgaggacacaactgatgtagcaacatatacaaaacaccatcctcttttctcatatcttggtaaaaaccnnnnnnnngcattcatttatctttat |
100 |
Q |
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| T |
34275655 |
gaaaatcgaggacacaactgatgtagcaacatatacaaaacaccatcctcttttctcatatcttggtaaaaaccttttttt-gcattcatttatctttat |
34275753 |
T |
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| Q |
101 |
agcagcttatttgcatatcatttccttattgtttaccaatgcttgtccctactttagagaataagaaatctgatgctgatggctcttcggatgaagaatc |
200 |
Q |
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| T |
34275754 |
agcagcttatttgcatatcatttccttattgtttaccaatgcttgtccctactttagagaataagaaatctgatgctgatggctcttcggatgaagaatc |
34275853 |
T |
|
| Q |
201 |
tgacaattcaggttagaaattatgttgaagaggaaaaatgtttcatttaactgcattatgttactggtttgtgtgtaatttatctcttactcattagtga |
300 |
Q |
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| T |
34275854 |
tgacaattcaggttagaaattatgttga---------------catttaactgcattatgttactggtttgtgtgtaatttatctcttactcattagtga |
34275938 |
T |
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| Q |
301 |
cgacaannnnnnnatatgctcttttcgcatgattacagaagagctaaatgaagattcaactgaaaactttggtgaagctgtacctgtgcttgaatgcact |
400 |
Q |
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| T |
34275939 |
cgacaatttttttatatgctcttttcgcatgattacagaagagctaaatgaagattcaactgaaaactttggtgaagctgtacctgtgcttgaatgcact |
34276038 |
T |
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| Q |
401 |
gatactgatattttctttgaagatctt |
427 |
Q |
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| T |
34276039 |
gatactgatattttctttgaagatctt |
34276065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 34283050 - 34283116
Alignment:
| Q |
150 |
tactttagagaataagaaatctgatgctgatggctcttcggatgaagaatctgacaattcaggttag |
216 |
Q |
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| T |
34283050 |
tactgtagagaataagaagtctgatgctgatggctctttggatgatgattttgacaatccgggttag |
34283116 |
T |
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