View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13398_high_4 (Length: 338)
Name: NF13398_high_4
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13398_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 30628042 - 30627794
Alignment:
| Q |
12 |
caatatcaatagcaaatatatgtttttaaactgcaccatcaatattaaattttaccaaaacaaaacggggtgatgctacataacctccataactctagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30628042 |
caatatcaatagcaaatatatgtttttaaactgcaccatcaatattaaatttgaccaaaacaaaacggggtgatgctacataacctccataactctagaa |
30627943 |
T |
|
| Q |
112 |
gccaattagaaaattaaccttcacatagctannnnnnnngtatgaaataaggttaaatatttctaacgaaagtggaatcaaaattgaaaaaattcctata |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30627942 |
gccaattagaaaattaaccttcacatagctattttttttgtatgaaataaggttaaatatttctaacgaaagtggaatcaaaattgaaaaaattcctata |
30627843 |
T |
|
| Q |
212 |
caaaataccctttccaacatacagatatccactccaatatacatatatc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30627842 |
caaaataccctttccaacatacagatatccactccaatatacatatatc |
30627794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University