View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13398_high_7 (Length: 212)
Name: NF13398_high_7
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13398_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 18665362 - 18665539
Alignment:
| Q |
20 |
agtttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgatgg |
119 |
Q |
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| T |
18665362 |
agtttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacaattttgatgg |
18665461 |
T |
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| Q |
120 |
taatccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
197 |
Q |
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| T |
18665462 |
taatccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
18665539 |
T |
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Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 15078466 - 15078289
Alignment:
| Q |
20 |
agtttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgatgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15078466 |
agtttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgctgg |
15078367 |
T |
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| Q |
120 |
taatccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15078366 |
taatccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatatcccttgatgtattagaccctttg |
15078289 |
T |
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