View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13398_low_1 (Length: 704)
Name: NF13398_low_1
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13398_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 279 - 690
Target Start/End: Complemental strand, 28789976 - 28789570
Alignment:
| Q |
279 |
ttactcttcctctactctcttctttttcttctgcacccnnnnnnnnnnctcttccactggtttccataaagattgagtctttttcttctctaccaaccat |
378 |
Q |
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| T |
28789976 |
ttactcttgctctactctcttctttttcttctgcacccttttttt---ctcttccactggtttccataaagattgagtccctttcttctctaccaaccat |
28789880 |
T |
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| Q |
379 |
ttttgcatgccttgttttgttatcttgcattggttcttgataatatcgatgcttcttttccatgttgtgacttcctattctaaccaactttaccagttcc |
478 |
Q |
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| T |
28789879 |
ttttgtatgccttgttttgttatcttgcattggttcttgataatatcgatgcttcttttccatgttgtgacttcctattctaaccaactttaccagttcc |
28789780 |
T |
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| Q |
479 |
tttgtttttcaatttccaagtattgtatccttttgtattcactttcacatgcatatagcttattgtgattgatttagcatggatatatctttacacaatg |
578 |
Q |
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| T |
28789779 |
tttgtttttcaatttccaaagattgtatccttttgtattcactttcacatgcatatagcttattgt----gatttagcatggatatatctttacacaatg |
28789684 |
T |
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| Q |
579 |
gaacattgtgattaatctgttttagtgttactttgtttacatggtggaacttaagagatgtgtttcttgctgtgtgatat--ttacagtagatggaaaga |
676 |
Q |
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| T |
28789683 |
gaacattgtgattaatctgttttagtgttactttgtttacatggtggaacttaagagatgtgtttcttgctgtgtgatattattacagtagatggaaaga |
28789584 |
T |
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| Q |
677 |
tatcagtgatgatg |
690 |
Q |
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| T |
28789583 |
tattagtgatgatg |
28789570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 28790190 - 28790051
Alignment:
| Q |
59 |
atatatataacattggttgttttgagtgtgattcttggttttatatagcagcacaaaacacaagcttctattctatttcagcacgcttgctttatggtta |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28790190 |
atatatataacattggttgttttgagtgtgattcttggttttatatagcagcacaaaacacaagcttctattctatttcagcacgcttgctttatggtta |
28790091 |
T |
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| Q |
159 |
agctttcttactgaagaattttgcatagtttgaaatggaa |
198 |
Q |
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| T |
28790090 |
agctttcttactgaagaattttgcatagtttgaaatggaa |
28790051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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