View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13398_low_13 (Length: 203)
Name: NF13398_low_13
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13398_low_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 45043691 - 45043494
Alignment:
| Q |
6 |
tggacatcatcacaatgaatataatggtaaccacggtcgtgaataccgctataatgaatataatggtgatcagagtcgcggttaccattataatgaatat |
105 |
Q |
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| T |
45043691 |
tggacattctcacaatgaatataatggtaaccacggtcgtgaataccgctataatgaatataatggtgatcagagtcgcggttaccattataatgaatat |
45043592 |
T |
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| Q |
106 |
aacggtggacatggaaatgtggtacctagctataactgtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatc |
203 |
Q |
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| T |
45043591 |
aacggtggacatggaaatgtggtacctagctataaccgtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatc |
45043494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 45043493 - 45043407
Alignment:
| Q |
117 |
tggaaatgtggtacctagctataactgtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatc |
203 |
Q |
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| T |
45043493 |
tggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatc |
45043407 |
T |
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