View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13398_low_4 (Length: 424)
Name: NF13398_low_4
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13398_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 23 - 410
Target Start/End: Original strand, 31474370 - 31474757
Alignment:
| Q |
23 |
ttgtccaacttcaaaaactcaaacaccatattccaggannnnnnnatataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgt |
122 |
Q |
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| T |
31474370 |
ttgtccaacttcaaaaactcagacaccatgatccaggatttttttatataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgt |
31474469 |
T |
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| Q |
123 |
tgccaaatacggtttccaaatcccaccttttaagtaaatcttctatgtgcctcctattattcatcatgaaaagattgcgcaaagcaaggtctctgtactc |
222 |
Q |
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| T |
31474470 |
tgccaaatacggtttccaaatcccaccttttaagtaaatcttctatgtgcctcctattattcatcatgaaaagattgcgcaaagcaaggtctctgtactc |
31474569 |
T |
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| Q |
223 |
tttggatttaccattcaattttttctctaacatatccattatccattccatctgttttataaaagaatctttcagcactactccattattcaccttggga |
322 |
Q |
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| T |
31474570 |
tttggatttaccattcaattttttctctaacatatccattatccattccatctgttctataaaagaatctttcagcactactccattattcaccttggga |
31474669 |
T |
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| Q |
323 |
tattcctgcaaaacttgttctagcgtgtggcgtgaactacaagcagaagtgacgtagctaatgatctggactgccattggatgatgtc |
410 |
Q |
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| T |
31474670 |
tattcctgcaaaacttgttctagcgtgtggcgtgacctacaagcagaagcgacgtagctaatgatctggactgccattggatgatgtc |
31474757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 70 - 410
Target Start/End: Original strand, 40841977 - 40842317
Alignment:
| Q |
70 |
ataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgttgccaaatacggtttccaaatcccaccttttaagtaaatcttctatg |
169 |
Q |
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| T |
40841977 |
ataaagatcaaggtcttgttggaatttcgcttgatttctttggaaccaatcattaccaaatatggtttccaagtccaagcttttaatcatagcttctatg |
40842076 |
T |
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| Q |
170 |
tgcctcctattattcatcatgaaaagattgcgcaaagcaaggtctctgtactctttggatttaccattcaattttttctctaacatatccattatccatt |
269 |
Q |
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| T |
40842077 |
tgcctcctattattcatcatgaaaagatagcgcaaagcaagttctctgtactctttggacttatatgtcaatcttttctctaacatatccattatccatt |
40842176 |
T |
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| Q |
270 |
ccatctgttttataaaagaatctttcagcactactccattattcaccttgggatattcctgcaaaacttgttctagcgtgtggcgtgaactacaagcaga |
369 |
Q |
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| T |
40842177 |
ccatctgttctataaaagaatctttcactactactccattattcaccttgggatattcctgcaaaacttgttcgagcgtgtggcgtgacctacaagcaga |
40842276 |
T |
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| Q |
370 |
agtgacgtagctaatgatctggactgccattggatgatgtc |
410 |
Q |
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| T |
40842277 |
agtgacgtagctaatgatctggactgccgttggatgatgtc |
40842317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 31405553 - 31405625
Alignment:
| Q |
69 |
tataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgttgccaaatacggtttccaa |
141 |
Q |
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||||||||||||||| |||||||| |||||||| || || ||||||||||| || ||||| | ||||||||| |
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| T |
31405553 |
tataaagatcaaggttttgttggatttttgctttgttattttggaaccaatcattaccaaaaatggtttccaa |
31405625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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