View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13398_low_5 (Length: 406)

Name: NF13398_low_5
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13398_low_5
NF13398_low_5
[»] chr2 (3 HSPs)
chr2 (94-394)||(1033728-1034026)
chr2 (1-50)||(1033626-1033675)
chr2 (58-100)||(1033664-1033706)
[»] chr6 (2 HSPs)
chr6 (94-394)||(34831411-34831710)
chr6 (66-100)||(34831732-34831766)
[»] chr7 (5 HSPs)
chr7 (94-394)||(127875-128174)
chr7 (284-362)||(17930791-17930869)
chr7 (1-61)||(127732-127792)
chr7 (212-265)||(17931036-17931089)
chr7 (68-100)||(127821-127853)
[»] chr1 (2 HSPs)
chr1 (94-365)||(41365364-41365640)
chr1 (1-100)||(41365243-41365342)
[»] chr4 (1 HSPs)
chr4 (198-364)||(46638137-46638303)
[»] chr3 (1 HSPs)
chr3 (198-355)||(34939597-34939754)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 94 - 394
Target Start/End: Original strand, 1033728 - 1034026
Alignment:
Q  94 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033728 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 1033827  T
Q  194 atcgaacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 293  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033828 atcgaacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 1033927  T
Q  294 ggggtgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagcaaacatgcaggctcatgttgttgttgt 393  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||| ||| |||||||||||||    
T  1033928 ggggtgtttgttttttatgctttcgatggtgaatgttattgagataagattgtggatgttgacttgtgggagtaaatctgca-gct-atgttgttgttgt 1034025  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1033626 - 1033675
Alignment:
Q  1 tggaaaaattcagaaacccatagattgaaaagataacaaaaaacaagatg 50  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1033626 tggaaaaattcagaaacccatagattgaaaagataacagaaaacaagatg 1033675  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 1033664 - 1033706
Alignment:
Q  58 gaaaacaagatgcaataacctagcctcaaaatccaattcaatc 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  1033664 gaaaacaagatgcaataacctagcctcaaaatccaatccaatc 1033706  T

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Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 94 - 394
Target Start/End: Complemental strand, 34831710 - 34831411
Alignment:
Q  94 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||    
T  34831710 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaataagagaattggtttcaagatttcaagcaatggatgaaaactataa 34831611  T
Q  194 atcgaacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 293  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  34831610 atcgaacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaatcgttgctttctgatatgttat 34831511  T
Q  294 ggggtgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagcaaacatgcaggctcatgttgttgttgt 393  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||| |||    
T  34831510 ggggtgtttgttttttatgctttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagtaaatgtgca-gctcatgttgttgctgt 34831412  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 34831766 - 34831732
Alignment:
Q  66 gatgcaataacctagcctcaaaatccaattcaatc 100  Q
    ||||||||||||||||||||||||||||| |||||    
T  34831766 gatgcaataacctagcctcaaaatccaatccaatc 34831732  T

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Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 94 - 394
Target Start/End: Original strand, 127875 - 128174
Alignment:
Q  94 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  127875 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaataagagaattggtttcaagatttcaagcaatggatgaaaaccataa 127974  T
Q  194 atcgaacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 293  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  127975 atcgaacagggtcaaagaagcttggagaatcgcttctcttgcgacaccgacatcgacgtcgtaaagaagcttggagaatcgttgcgttctgatctgttat 128074  T
Q  294 ggggtgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagcaaacatgcaggctcatgttgttgttgt 393  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||| |||    
T  128075 ggggtgtttgttttttatgctttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggagtaaatctgca-gctcatgttgttgctgt 128173  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 17930869 - 17930791
Alignment:
Q  284 gatctgttatggggtgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgg 362  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||| ||||||||||||||||    
T  17930869 gatctgttatggggtgtttgtttttgatgctttcgatggtgaatgttattgagattaggttggggatgttgtcttgtgg 17930791  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 127732 - 127792
Alignment:
Q  1 tggaaaaattcagaaacccatagattgaaaagataacaaaaaacaagatgaatcacggaaa 61  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||    
T  127732 tggaaaaattcagaaacccatagattaaaaagataaaagaaaacaagatgaatcatggaaa 127792  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 17931089 - 17931036
Alignment:
Q  212 agcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagctt 265  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  17931089 agcttagagaatcgctcctcttgcgacgccggcatcgacgtcgcaaagaagctt 17931036  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 127821 - 127853
Alignment:
Q  68 tgcaataacctagcctcaaaatccaattcaatc 100  Q
    ||||||||||||||||||||||||||| |||||    
T  127821 tgcaataacctagcctcaaaatccaatccaatc 127853  T

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Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 94 - 365
Target Start/End: Original strand, 41365364 - 41365640
Alignment:
Q  94 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41365364 ttcaatctttttgttcttctttttgaatcgattcgatatgaaaattaaaaccaattagagaattggtttcaagatttcaagcaagggatgaaaaccataa 41365463  T
Q  194 atcgaacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttat 293  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  41365464 atcgaacagggtcaaagaagcttggagaatcgctcctcttgcgacaccggcatcgacgttgtaaagaagcttggagaatcgttgctttctgatctgttat 41365563  T
Q  294 ggggtgtttgttttttatg-----ttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtgggag 365  Q
    |||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41365564 ggggtgtttgttttttatgctttaatttcgatggtgaatgttattgagataagattgtggatgttgacttgtgggag 41365640  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41365243 - 41365342
Alignment:
Q  1 tggaaaaattcagaaacccatagattgaaaagataacaaaaaacaagatgaatcacggaaaacaagatgcaataacctagcctcaaaatccaattcaatc 100  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  41365243 tggaaaaattcagaactccatagattgaaaagataacaaaaaacaagatgaatcatggaaaacaagatgcaataacctagcctcaaaattcaatccaatc 41365342  T

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Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 198 - 364
Target Start/End: Original strand, 46638137 - 46638303
Alignment:
Q  198 aacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttatgggg 297  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||| | ||||||||||| ||||||||||    
T  46638137 aacagggtcaaagaaacttggagaatcgctcctcttgcgacaccgacattgacgtcgtaaagaagtttggagaatcgctgctttctgatatgttatgggg 46638236  T
Q  298 tgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgtcttgtggga 364  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  46638237 tgtttgttttttatgctttcgatggtgaatgttattgagatgagattgaggatgttgtcttgtggga 46638303  T

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Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 198 - 355
Target Start/End: Complemental strand, 34939754 - 34939597
Alignment:
Q  198 aacagggtcaaagaagcttggagaatcactcctcttgcgacaccggcatcgacgtcgtaaagaagcttggagaattgttgctttctgatctgttatgggg 297  Q
    |||||| |||||||| |||||||||||||||||||||| ||| || ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  34939754 aacaggttcaaagaaacttggagaatcactcctcttgcaacatcgacatcgacgtcgtaaagaagctaggagaatcgctgctttctgatctgttatgggg 34939655  T
Q  298 tgtttgttttttatgttttcgatggtgaatgttattgagataagattgtggatgttgt 355  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||    
T  34939654 tgtttgttttttatgctttcgatggtgaatgttattgaggtgagattggggatgttgt 34939597  T

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