View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13398_low_6 (Length: 339)

Name: NF13398_low_6
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13398_low_6
NF13398_low_6
[»] chr4 (9 HSPs)
chr4 (1-323)||(55665101-55665419)
chr4 (47-323)||(54861710-54861981)
chr4 (66-320)||(52985404-52985652)
chr4 (20-275)||(55635558-55635807)
chr4 (44-319)||(54627358-54627629)
chr4 (48-156)||(3671698-3671806)
chr4 (22-305)||(55658904-55659183)
chr4 (18-169)||(50191733-50191881)
chr4 (259-312)||(3671636-3671689)
[»] chr8 (1 HSPs)
chr8 (20-312)||(9889837-9890111)
[»] chr2 (1 HSPs)
chr2 (44-311)||(13401759-13402022)
[»] chr7 (1 HSPs)
chr7 (44-116)||(46154649-46154721)
[»] chr1 (2 HSPs)
chr1 (44-120)||(37310521-37310597)
chr1 (47-120)||(22514480-22514553)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 55665419 - 55665101
Alignment:
Q  1 gccagcgctgccctctattgagcgtttgattttgtccaatgacgatgaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaaca 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  55665419 gccagcgctgccctctcttgagcgtttgattttgtccaatgacgatgaagaagtcctgagtgatgcatgttgggcattctcatatctttctgatggaaca 55665320  T
Q  101 aatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  55665319 aatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccctggtgcaccaataat 55665220  T
Q  201 ttgtttcaattattgattgattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgg 300  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  55665219 ttgtttcaattatt----gattattttggctctaaatgtatgcgcatgttttgaaggtacccatctccttcagtgttgactcctgtacttcacacgctgg 55665124  T
Q  301 gaaatattgttgctggagacaat 323  Q
    |||||||||||||||| ||||||    
T  55665123 gaaatattgttgctggggacaat 55665101  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 323
Target Start/End: Complemental strand, 54861981 - 54861710
Alignment:
Q  47 gaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagac 146  Q
    ||||||||||| || ||| |||| | |||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  54861981 gaagaagtcctaaccgatgcatggtgggcactctcgtatctttctgatggaacaaatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagac 54861882  T
Q  147 tggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttggctctaaatgtatgcgca 246  Q
    ||||| |||| |||| ||||||||||||| || | ||||  ||   |||||| | | || |||||    |||||||||||||||||||||| |||| |||    
T  54861881 tggtgcagctccttctgtaagtaccaattcttat-tccctggtcagccaatattctattgcaatt----attgattattttggctctaaatatatgtgca 54861787  T
Q  247 tgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaat 323  Q
    ||||||||||||||||||||||||||||| ||| ||||||  ||| |||  |||||||||||||  |||||||||||    
T  54861786 tgttttgaaggcacccatctccttcagtgctgattcctgtcgttcgcacaatgggaaatattgtaactggagacaat 54861710  T

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Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 66 - 320
Target Start/End: Complemental strand, 52985652 - 52985404
Alignment:
Q  66 catgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagta 165  Q
    |||||| |||| |||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||| |||||||||||||||||||||| |||| |||    
T  52985652 catgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagctacttctgta 52985553  T
Q  166 agtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttggctctaaatgtatgcgcatgttttgaaggcacccatc 265  Q
    |||||||| ||||| |||||  ||  ||||||  |||||| |||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52985552 agtaccaa-ttttcgatccctggtcaaccaat-ttttgttgcaatt----attgattattttggctctaaatgtatgtgcatgttttgaaggcacccatc 52985459  T
Q  266 tccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagac 320  Q
    |||||||||| |||  |||||| ||  |||  | |||||||||||  ||||||||    
T  52985458 tccttcagtgctgatacctgtaatttgcacaattggaaatattgtaactggagac 52985404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 55635558 - 55635807
Alignment:
Q  20 gagcgtttgattttgtccaatgacgatgaagaagtcctgactgattcatgtttggcattctcata-tctttctgatggaacaaatgacaaaatccaagct 118  Q
    |||||||||||||| ||||||||   ||||||||||||| | ||| |||| | |||| ||||||| | ||||||||||||  |||||||||||||||||     
T  55635558 gagcgtttgattttttccaatga---tgaagaagtcctgtcagatgcatgctgggcactctcataatatttctgatggaatgaatgacaaaatccaagca 55635654  T
Q  119 gtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgatt 218  Q
    |||||| | ||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||   |  ||||||  | | || |||||    |||    
T  55635655 gtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccaattcttctatccctgttcaaccaattttctattgcaatt----att 55635750  T
Q  219 gattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtg 275  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  55635751 gattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttcagtg 55635807  T

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Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 319
Target Start/End: Original strand, 54627358 - 54627629
Alignment:
Q  44 gatgaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggca 143  Q
    |||||||  |||||||| ||  |||||| |||| |||| ||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||| |    
T  54627358 gatgaagtcgtcctgaccgaggcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggta 54627457  T
Q  144 gactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttggctctaaatgtatgc 243  Q
    |||||||| |  | |||| ||||||||||||| || ||||||  ||  ||||||  | | || ||| |    |||||||||||||||||||||||||||     
T  54627458 gactggtgcaaatccttctgtaagtaccaattcttatatccctcgtcaaccaatgttctattgcaagt----attgattattttggctctaaatgtatgt 54627553  T
Q  244 gcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggaga 319  Q
    |||||||||||||| | ||||||| ||||| | ||  ||||| ||||| |||  |||||||||||||  |||||||    
T  54627554 gcatgttttgaagggaaccatctctttcagcgctgtttcctgcacttcgcacagtgggaaatattgtatctggaga 54627629  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 3671806 - 3671698
Alignment:
Q  48 aagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagact 147  Q
    |||||||| || | ||| |||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3671806 aagaagtcatggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagact 3671707  T
Q  148 ggtggagct 156  Q
    |||||||||    
T  3671706 ggtggagct 3671698  T

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Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 305
Target Start/End: Complemental strand, 55659183 - 55658904
Alignment:
Q  22 gcgtttgattttgtccaatgacgatgaagaagtcctgactgattcatgtttggcattctcatatctttctga---tggaacaaatgacaaaatccaagct 118  Q
    |||||||||||| ||||||||   |||||||||| |||| ||  |||| | |||| |||||||||||||| |   |||  |||||||| ||||||||||     
T  55659183 gcgtttgattttttccaatga---tgaagaagtcgtgacagaagcatgctgggcactctcatatctttctaaatatggttcaaatgacgaaatccaagcg 55659087  T
Q  119 gtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgatt 218  Q
    || |||||||| ||  ||||||  ||||| || ||||| |||  ||||||||||| | || ||||||  ||  ||||||  | |||| ||||| ||||||    
T  55659086 gtaatcgaggctggcatatgtgatagactagtagagctccttttgtaagtaccaaatcttatatccctggtcaaccaattttctgttgcaattgttgatt 55658987  T
Q  219 gattattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaat 305  Q
        ||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||| ||||||||    
T  55658986 ----attttggctctaaatctacgcgcatgttttgaaggcgcccgtctccttcagtgttgactcctgcacttcaaacggtgggaaat 55658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 50191881 - 50191733
Alignment:
Q  18 ttgagcgtttgattttgtccaatgacgatgaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagc 117  Q
    |||||||||||||||||||    || ||||||||||| ||||| ||| | || | ||| || ||||| || |||||||| |||||||||||||||||||     
T  50191881 ttgagcgtttgattttgtcg---gaggatgaagaagttctgacagatgcctgctgggctttatcatacctatctgatggcacaaatgacaaaatccaaga 50191785  T
Q  118 tgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagta 169  Q
      | || || ||||||||||||||| || ||||| |||| ||| ||| ||||    
T  50191784 aattattgacgcaggtgtatgtggccgattggtgcagctccttaagtgagta 50191733  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 3671689 - 3671636
Alignment:
Q  259 acccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttg 312  Q
    ||||||||||||||||| ||| ||||| ||| | ||| ||||||||||||||||    
T  3671689 acccatctccttcagtggtgattcctgcactccgcacattgggaaatattgttg 3671636  T

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Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 9889837 - 9890111
Alignment:
Q  20 gagcgtttgattttgtccaatgacgatgaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagctg 119  Q
    |||| ||||||||| ||||||||   ||||||||||||| | ||| |||| | |||| |||||||||||||||||||||||||||||||||||||||| |    
T  9889837 gagcttttgattttttccaatga---tgaagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcgg 9889933  T
Q  120 tgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattg 219  Q
    ||||||||||||||||||||||||||||||||||||| |||  ||||||||||||| |||||||||   |||        | ||||||||||    |||     
T  9889934 tgatcgaggcaggtgtatgtggcagactggtggagctccttttgtaagtaccaattcttctatccc---tgc--------tctgtttcaatt----attt 9890018  T
Q  220 attattttggctctaaatgtatgcgcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttg 312  Q
    |||| |||||||||||||| ||| |||||||||||||| |||| |||||||||||| ||| ||||| ||||| ||| ||||||||||||||||    
T  9890019 attaatttggctctaaatgcatgtgcatgttttgaaggaacccttctccttcagtggtgattcctgcacttcgcacattgggaaatattgttg 9890111  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 44 - 311
Target Start/End: Original strand, 13401759 - 13402022
Alignment:
Q  44 gatgaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggca 143  Q
    ||||||||||||||||| ||| |||| | |||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  13401759 gatgaagaagtcctgacagatgcatgctgggcactctcttatctttctgatggaacaaatgacaaaatccaagcggtgattgaggcaggtgtatgtggca 13401858  T
Q  144 gactggtggagcttcttcagtaagtaccaatttttctatccccagtgcaccaataatttgtttcaattattgattgattattttggctctaaatgtatgc 243  Q
    |||| ||| |||| |||| || |||| | |||  ||||| |  | |  |||| | || | || || ||||||||||    ||||| |||||||| |||      
T  13401859 gactagtgcagctccttctgtgagtaacgattcatctattcttatttgaccagtgatcttttgcagttattgattg----ttttgactctaaatttatat 13401954  T
Q  244 gcatgttttgaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgtt 311  Q
    |||||| ||| ||||||||||||||||||||| |||  |||| ||||| |||| ||||||||||||||    
T  13401955 gcatgtgttgtaggcacccatctccttcagtgctgatccctgcacttcgcacggtgggaaatattgtt 13402022  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 46154721 - 46154649
Alignment:
Q  44 gatgaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaag 116  Q
    |||||||||||| |||||||| | |||| |||| | |||||||||||||||||  ||||||||||||| ||||    
T  46154721 gatgaagaagtcttgactgatgcctgttgggcactttcatatctttctgatggtgcaaatgacaaaattcaag 46154649  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 37310597 - 37310521
Alignment:
Q  44 gatgaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagctgt 120  Q
    |||||||||||| |||||||| | || | |||| | ||||||||||||||||| ||||| || ||||| ||||||||    
T  37310597 gatgaagaagtcttgactgatgcctgctgggcactatcatatctttctgatggtacaaacgataaaattcaagctgt 37310521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 22514553 - 22514480
Alignment:
Q  47 gaagaagtcctgactgattcatgtttggcattctcatatctttctgatggaacaaatgacaaaatccaagctgt 120  Q
    ||||||||| | |||||| | || | |||| | ||||||||||||||||| |||||||| ||||| ||||||||    
T  22514553 gaagaagtcgtcactgatgcctgctgggcactatcatatctttctgatggtacaaatgaaaaaattcaagctgt 22514480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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