View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13398_low_8 (Length: 329)
Name: NF13398_low_8
Description: NF13398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13398_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 36 - 310
Target Start/End: Original strand, 34712829 - 34713103
Alignment:
| Q |
36 |
acatcatcaacatgtatatttaaactcacggttcaaaaataaaatacataagagaggtgagactattgaaaacacggcatatggagttataaagaaacaa |
135 |
Q |
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| T |
34712829 |
acatcatcaacatgtatatttaaactcacggttcaaaaataaaatacataagagaggtgagactattgaaaacacaacatatggagttataaagaaacaa |
34712928 |
T |
|
| Q |
136 |
tgagcctccacttttattcacaccctcctttttacgtatatactccttctcatttttgaaaccttcttttcaaaatactactcttaacttttgaacaact |
235 |
Q |
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| T |
34712929 |
tgagcctccacttttattcacaccctcctttttacgtatatactccttctcatttttgaaaccttcttttcaaaatactactcttaacttttgaacaact |
34713028 |
T |
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| Q |
236 |
ctttgctaaaaaatgtaacctgtctactgtaacttgttgtagaagattcttgcagtggagcaatgaggaagtttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34713029 |
ctttgctaaaaaatgtaacctgtctactgtaacttgttgtagaagattcttgcagtggagcaatgaggaagtttc |
34713103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 7692655 - 7692494
Alignment:
| Q |
150 |
tattcacaccctcctttttacgtatatactccttctcatttttgaaac-cttcttttcaaaatactactcttaacttttgaacaactctttgc-taaaaa |
247 |
Q |
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|||||| |||||||||||| |||||||| ||| | |||| | ||| ||| ||||||||||||||||| |||||||| ||||||||||||| ||||| |
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| T |
7692655 |
tattcataccctcctttttgaatatatacttctttttatttctaaaaatcttgttttcaaaatactactcataacttttaaacaactctttgcaaaaaaa |
7692556 |
T |
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| Q |
248 |
atgtaacctgtctactgtaacttgttgtagaagattcttgcagtggagcaatgaggaagttt |
309 |
Q |
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| T |
7692555 |
aagtaacctgtttgttgtagcttgccgtagaagatttttgtagtggagtaatgaagaagttt |
7692494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 49095240 - 49095139
Alignment:
| Q |
147 |
ttttattcacaccctcctttttacgtatatactccttctcatttttgaaaccttcttttcaaaatactactcttaacttttgaacaactctttgctaaaa |
246 |
Q |
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||||||||||||||||||||| || ||||||||||| | ||| | ||| ||| ||||||||||||||||| ||||| | |||||| |||||| |||| |
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| T |
49095240 |
ttttattcacaccctccttttgacacatatactcctttttattcctaaaatcttgttttcaaaatactactcataactgctaaacaacactttgcaaaaa |
49095141 |
T |
|
| Q |
247 |
aa |
248 |
Q |
| |
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|| |
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|
| T |
49095140 |
aa |
49095139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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