View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13399_high_1 (Length: 738)
Name: NF13399_high_1
Description: NF13399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13399_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 1 - 725
Target Start/End: Complemental strand, 944392 - 943668
Alignment:
| Q |
1 |
acgagagtttcacacaagcactgaagaaagcaatgtcctccagcgtgaaactcatcagataaaagatgatatacagcacttgaatgagagatatcaggct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
944392 |
acgagagtttcacacaagcactgaagaaagcaatgtcctccagcgtgaaactcatcagataaaagatgatatacagcacttgaatgagagatatcaggct |
944293 |
T |
|
| Q |
101 |
atgcttgaacaactacagagtttaggtctgaatcctaattcttttgcagcatctgtaaaagatctacaaaatgagaacttcatgctaaaagaaacctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
944292 |
atgcttgaacaactacagagtttaggtctgaatcctaattcttttgcagcatctgtaagagatctacaaaatgagaacttcatgctaaaagaaacctgca |
944193 |
T |
|
| Q |
201 |
aaaaagaacacagtgagaaagaagctcttcgtgaaaaatcaaaagacatgaatgaagttttgatggaaaatgcctgtatggaattttctctgttaggact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
944192 |
aaaaagaacacagtgagaaagaagctcttcgtgaaaaatcgaaagacatgaatgaagttttgatggaaaatgcctgtatggaattttctctgttaggact |
944093 |
T |
|
| Q |
301 |
gaatgatgagttagatggattgagaggaacagtgaaggaaattcaacagttctgccatgttctccaagaagaaaaatccattcttgctgatgagaaatca |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
944092 |
gaatgatgagttagatggattgagaggaacagtgaaggaaattcaacagttctgccaagttctccaagaagaaaaatccattcttgctgatgagaaatca |
943993 |
T |
|
| Q |
401 |
actcttctttcacagctgcaaattatcactgaaagtatgcagaagatattggagaataatactgtgttggagaagtccctctctgatgctaaaattgagt |
500 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
943992 |
acccttctttcacagctgcaaattatcactgaaagtatgcagaagatattggagaataatactgtgctggagaagtccctctctgatgctaaaattgagt |
943893 |
T |
|
| Q |
501 |
ttgaaggtttgagaattaaatcaggtgatttggaagactgctgcaaattgctaaatgatgagaaaaacaatcttcaaaatgaaagaagcatgctaatatc |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
943892 |
ttgaaggtttgagaattaaatcaggtgatttggaagactgctgcaaattgctaaatgatgagaaaaacaatcttcaaaatgaaagaagcatgctaatatc |
943793 |
T |
|
| Q |
601 |
tcaattggagattgttgaagaaaagctgagtaaccttgaaaagaaggttacaaatttggaagtaaaatatgctgatgtggagaaagacaaagaaagtgca |
700 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
943792 |
tcaattggagattgttgaagaaaagctaagtaaccttgaaaagaaggttacaaatttggaagaaaaatatgctgatgtggagaaagacaaagaaagtgca |
943693 |
T |
|
| Q |
701 |
gtcaatcaagtagaagaactctttg |
725 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
943692 |
gtcaatcaagtagaagaactctttg |
943668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 214 - 720
Target Start/End: Complemental strand, 46661564 - 46661058
Alignment:
| Q |
214 |
tgagaaagaagctcttcgtgaaaaatcaaaagacatgaatgaagttttgatggaaaatgcctgtatggaattttctctgttaggactgaatgatgagtta |
313 |
Q |
| |
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|||||||||||||||||||||||| || || || ||| || || |||||| ||||| |||| |||| ||| ||| || | | | ||||||||||| || |
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| T |
46661564 |
tgagaaagaagctcttcgtgaaaagtcgaaggatatggataaacttttgagtgaaaaggcctttatgcaatgttccctatcaagtttgaatgatgagcta |
46661465 |
T |
|
| Q |
314 |
gatggattgagaggaacagtgaaggaaattcaacagttctgccatgttctccaagaagaaaaatccattcttgctgatgagaaatcaactcttctttcac |
413 |
Q |
| |
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|||||| | |||| ||| ||||| || ||||| ||| ||||||||||| | ||||||||||||| ||||| || |||||||||| || | | || | |
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| T |
46661464 |
gatggagtaagagatacaatgaagaaatttcaagagtcatgccatgttctgaaggaagaaaaatccactcttgttggtgagaaatcagctttattgtcgc |
46661365 |
T |
|
| Q |
414 |
agctgcaaattatcactgaaagtatgcagaagatattggagaataatactgtgttggagaagtccctctctgatgctaaaattgagtttgaaggtttgag |
513 |
Q |
| |
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| ||||||||||||| ||||||||||||||| |||||||||| || | || |||||||||| || |||||| | || |||||| |||||||||| || |
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| T |
46661364 |
aattgcaaattatcaccgaaagtatgcagaagttattggagaagaacgccttgctggagaagtctctgtctgattcaaagattgagcttgaaggtttaag |
46661265 |
T |
|
| Q |
514 |
aattaaatcaggtgatttggaagactgctgcaaattgctaaatgatgagaaaaacaatcttcaaaatgaaagaagcatgctaatatctcaattggagatt |
613 |
Q |
| |
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||||||| || |||||||| | |||||| ||||| || ||||||| || ||||| || ||||| ||||| || |||||||||||| || | |
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| T |
46661264 |
ggctaaatcaagtagcttggaagaattctgcaatttgctgaacaatgagaagtgcagtcttcttaacgaaaggagcatcctggtatctcaattggggagt |
46661165 |
T |
|
| Q |
614 |
gttgaagaaaagctgagtaaccttgaaaagaaggttacaaatttggaagtaaaatatgctgatgtggagaaagacaaagaaagtgcagtcaatcaagtag |
713 |
Q |
| |
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|| ||||| || || |||||||| ||||| | | |||| || ||||| | ||||||| || || ||||||||||||||||||| |||||||||||| | |
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| T |
46661164 |
gtcgaagagaaactaagtaacctagaaaaaaggtttactaaattggaggaaaaatattcttatatggagaaagacaaagaaagcaaagtcaatcaagtgg |
46661065 |
T |
|
| Q |
714 |
aagaact |
720 |
Q |
| |
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||||||| |
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|
| T |
46661064 |
aagaact |
46661058 |
T |
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