View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13399_high_3 (Length: 388)
Name: NF13399_high_3
Description: NF13399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13399_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 32921522 - 32921138
Alignment:
| Q |
1 |
caaacgatgatatatattctatattagaac-aattgtaccagtcaacttgcaatttcaatgatctttaggtattggaccatggttatcaaatggtagttc |
99 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
32921522 |
caaacgatgatctatattctatattagaaccaattgtaccagtcaacttgcaatttcaatgatctttaggtattggaccatagttatcaaattgtagttc |
32921423 |
T |
|
| Q |
100 |
aaatcttatgaataattgaatcaaaagaactatttttt-aatcgtgaatctaattttatataattaataaattgtaagatacattgtcaataaaataaat |
198 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32921422 |
aaatattatgaataattgaatcaaaagaactattttttgaatcgtgaatctaattttatataattaataaattgtaagatacattgtcaataaaataaat |
32921323 |
T |
|
| Q |
199 |
gaaatctaccgatctgttata---attaaaataaacccttaaatcctgtacc-----cnnnnnnnnnnnnnccttaaatcatctagtaaaaatggcgttt |
290 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32921322 |
gaaatctacctatctgttatatttattaaaataaacccttaaatcctgtaccaaaaataaaaaataaaaaaccttaaatcatctagtaaaaatggcgttt |
32921223 |
T |
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| Q |
291 |
acaccaccactaaaagtgggtactcttgccttctctccatcgatctaccatcttccttaccggtctctggtggacaagatgatgt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||| |
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| T |
32921222 |
acaccaccactaaaagtgggtactcttgccttctctccctcgatctaccatctttcttactggtctctggtggacaatatgatgt |
32921138 |
T |
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