View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13399_high_8 (Length: 252)
Name: NF13399_high_8
Description: NF13399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13399_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 41230513 - 41230747
Alignment:
| Q |
11 |
gaagaatatccaagtgaaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtcgaactggaggtaaatttctgtct |
110 |
Q |
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| T |
41230513 |
gaagcatatccaactgaaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtcgaactggaggtaaatttc----- |
41230607 |
T |
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| Q |
111 |
ttcactacaataagatttt-ttcgactcatgagaaagagctattctgcaaattgcagtctcaaaaatgcatcaatacttgcacatgcaagtttgactatt |
209 |
Q |
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| T |
41230608 |
---actacaataagatttttttcgactcatgagaaagagctattctccaaattgcagtctcaaaaatgcatcaatacttgcacatgcaagtttgagtatt |
41230704 |
T |
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| Q |
210 |
ctccacaatttgatattttctcttgtaagctttcatcccagca |
252 |
Q |
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| T |
41230705 |
ctccactattggatattttctcttgtaagctttcatcccagca |
41230747 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 42413954 - 42414057
Alignment:
| Q |
11 |
gaagaatatccaagtgaaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtcgaactggaggtaaatttctgtct |
110 |
Q |
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| T |
42413954 |
gaagcatatccaagtgaaataaagacacgagaacttgacattcatttaggccaggc-tgtgatcgcgcaggacagtcacgccggaggtaaatttctttct |
42414052 |
T |
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| Q |
111 |
ttcac |
115 |
Q |
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| T |
42414053 |
ttcac |
42414057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 42414337 - 42414395
Alignment:
| Q |
159 |
aattgcagtctcaaaaatgcatcaa-tacttgcacatgcaagtttgactattctccaca |
216 |
Q |
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| T |
42414337 |
aattgcagtctcaaaaattcatcaattgattgcacaggcaagtttgaccattctccaca |
42414395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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