View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13399_low_14 (Length: 203)
Name: NF13399_low_14
Description: NF13399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13399_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 26907214 - 26907054
Alignment:
| Q |
20 |
atgaatagacatggatatggttgctggtagaagaaagcatagaactggaaagaaagatgaacagaaactactataatgattacgttgaggatattgcatt |
119 |
Q |
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| T |
26907214 |
atgaatagacatggatatggttgctggtagaagaaagcatagaactggaaagaaagatgaacagaaactactataatgattacgttgaggatattgcatt |
26907115 |
T |
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| Q |
120 |
taatgcaaagatttgcctaagatagaaacatgcagttaaaagttaaattcatgctctgaca |
180 |
Q |
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| T |
26907114 |
taatgcaaagatttgcccaagatagaaacatgcagttaaaagttaaattcatgctctgaca |
26907054 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 1027205 - 1027269
Alignment:
| Q |
23 |
aatagacatggatatggttgctggtagaagaaagcatagaactggaaagaaagatgaacagaaacta |
89 |
Q |
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| T |
1027205 |
aatagacacggatatggt--ctggtagaagaaagcatagaatgggaaagaaagatgaacaggaacta |
1027269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 31586779 - 31586839
Alignment:
| Q |
23 |
aatagacatggatatggttgctggtagaagaaagcatagaactggaaagaaagatgaacag |
83 |
Q |
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||||||||||||||||||||||| |||||||||||| | | | | ||| |||||||||||| |
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| T |
31586779 |
aatagacatggatatggttgctgctagaagaaagcaaaaaccggaaaataaagatgaacag |
31586839 |
T |
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