View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13399_low_2 (Length: 548)
Name: NF13399_low_2
Description: NF13399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13399_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 45 - 527
Target Start/End: Original strand, 28790371 - 28790853
Alignment:
| Q |
45 |
tttgtagattcaagctgacaagcattggtacaaccgcatattataacaaatgcaaaatcatttgcttagcataaaaatttaacaaaggcatttttagaac |
144 |
Q |
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| T |
28790371 |
tttgtagattcaagctgacgagcattggcacaaccgcatattataacaaatgcaaaatcatttgcttagcataaaaatttaacaaaggcatttttagaac |
28790470 |
T |
|
| Q |
145 |
tccagtctactagcttccatggtcaactcaggcattctttctactgaaactttagttacatctttaataacttcgtagcgaaatccaatatcagaaacca |
244 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28790471 |
tccagtctactagcttccatggtcaactcaggtattctttctactggaactttagttacatctttaataacttcgtagcgaaatccaatatcagaaacca |
28790570 |
T |
|
| Q |
245 |
atcttttaatgcagtaagttccacagccaaccacagccttaccaaaaagactggagttcacaaaccggagtgatgaagaggctacagtactggtagcagc |
344 |
Q |
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| T |
28790571 |
atcttttaatgcagtaagttccacagccaaccaaagccttaccaaaaagactggagttcacaaaccggaatgatgaagaggctacagtactggtagcagc |
28790670 |
T |
|
| Q |
345 |
caaataagatgctgcttgtccactgcagccttttgtggttgcaaaaagacctgttttgcaataaactgcaaaatcttcacagttattcttggagatatgg |
444 |
Q |
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| T |
28790671 |
caaataagatgctgcttgtccactgcagccttttgtggttgcaaaaagacctgttttgcaataaactgcaaaatcttcacagttattcttggagatatgg |
28790770 |
T |
|
| Q |
445 |
tagcaaccaaatcctttttcaagaagatataaagcgcgaggaaggacctcttcagttggatccgaagaagctagggtgcatgt |
527 |
Q |
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| T |
28790771 |
tagcaaccaaatcctttttcaagaagatataaagcgcgaggaaggacctcttcagttggatccgaagaagctagggtgcatgt |
28790853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 394 - 515
Target Start/End: Original strand, 28783614 - 28783735
Alignment:
| Q |
394 |
cctgttttgcaataaactgcaaaatcttcacagttattcttggagatatggtagcaaccaaatcctttttcaagaagatataaagcgcgaggaaggacct |
493 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||||||| ||| ||||||| ||||||||| |||||||||||||| ||||| || ||||||| |
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| T |
28783614 |
cctgttttgcaataaattgcaaaatcttcacaattattcttatagaaatggtagtcaccaaatccattttcaagaagatacaaagcacggaataggacct |
28783713 |
T |
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| Q |
494 |
cttcagttggatccgaagaagc |
515 |
Q |
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||| |||||||| |||||||| |
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| T |
28783714 |
ctttggttggatctgaagaagc |
28783735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 506
Target Start/End: Complemental strand, 32482567 - 32482452
Alignment:
| Q |
391 |
agacctgttttgcaataaactgcaaaatcttcacagttattcttggagatatggtagcaaccaaatcctttttcaagaagatataaagcgcgaggaagga |
490 |
Q |
| |
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||||| |||||||| |||| |||||| |||||||||||||| ||| | | || ||| | |||||||| ||||||| |||| || ||||||| |||||| |
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| T |
32482567 |
agaccagttttgcagtaaattgcaaagtcttcacagttattattgaaaacattgtaaccgccaaatccattttcaaaaagaaatgaagcgcggcgaagga |
32482468 |
T |
|
| Q |
491 |
cctcttcagttggatc |
506 |
Q |
| |
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| |||||||||||||| |
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| T |
32482467 |
catcttcagttggatc |
32482452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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