View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13399_low_3 (Length: 526)
Name: NF13399_low_3
Description: NF13399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13399_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 13108942 - 13109444
Alignment:
| Q |
17 |
acttcaatgcatttgtgttaatcttattgataaaagaatgactaattagaagaagnnnnnnnntcaacgccacttaaaagttaaaacattgatgtatatt |
116 |
Q |
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| T |
13108942 |
acttcaatgcatttgtgttaatcttattgataaaagaatgactaattagaagaagaaaaaaaatcaacgccacttaaaa-------cattgatgtat--t |
13109032 |
T |
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| Q |
117 |
gtgtcaaagttacaatccattatcattaataaccttactaaaatttgatcaaaaagtattaaccttaacaatttacaatagcgatcttgtgcacaattta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13109033 |
gtgtcaaagttacaatccattatcattaataaccttactaaaatttgatcaaaaagtattaacctta-caatttacaatagcgatcttgtgcacaattta |
13109131 |
T |
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| Q |
217 |
cagtatttcatacaactgcaatg---aatgaatgaatgaattaagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttat |
313 |
Q |
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| T |
13109132 |
cagtatttcatacaactgcaatgtcaagtttaaaaaaaattcaagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttat |
13109231 |
T |
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| Q |
314 |
ataattagggttacacaaggtggnnnnnnnnngtatcagaatcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatacttg |
413 |
Q |
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| T |
13109232 |
ataattagggttacacaaggtggaaaaaaaaaatatcagaatcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatatttg |
13109331 |
T |
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| Q |
414 |
cctttcaagtttctccgaaagttttttggttgatgacatgccatggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactcta |
513 |
Q |
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| T |
13109332 |
cctttcaagtttctcttaaagttttttggttgattacatgccatggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactcta |
13109431 |
T |
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| Q |
514 |
aaatctagttcat |
526 |
Q |
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| T |
13109432 |
aaatctagttcat |
13109444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 13038947 - 13039450
Alignment:
| Q |
17 |
acttcaatgcatttgtgttaatcttattgataaaagaatgactaattagaagaagnnnnnnnntcaacgccacttaaaagttaaaacattgatgtatatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | |
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| T |
13038947 |
acttcaatgcatttgtgttaatcttattgataaaagaatgactaattagaagaagaaaaaaaatcaacgccacttaaaa-------cattgatgtat--t |
13039037 |
T |
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| Q |
117 |
gtgtcaaagttacaatccattatcattaataaccttactaaaatttgatcaaaaagtattaaccttaacaatttacaatagcgatcttgtgcacaattta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13039038 |
gtgtcaaagttacaatccattatcattaataaccttactaaaatttgatcaaaaagtattaacctta-caatttacaatagcgatcttgtgcacaattta |
13039136 |
T |
|
| Q |
217 |
cagtatttcatacaactgcaatg---aatgaatgaatgaattaagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttat |
313 |
Q |
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| T |
13039137 |
cagtatttcatacaactgcaatgtcaagtttaaaaaaaattcaagtgtagtaaagtttcacatacataaatttgaatgaatgaatgatatgtttgtttat |
13039236 |
T |
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| Q |
314 |
ataattagggttacacaaggtggnnnnnnnnng-tatcagaatcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatactt |
412 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13039237 |
ataattagggttacacaaggtggaaaaaaaaaaatatcagaatcattccacgcgtaagttacgaaactgcttcttcaacaatgaccaatatgagatattt |
13039336 |
T |
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| Q |
413 |
gcctttcaagtttctccgaaagttttttggttgatgacatgccatggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactct |
512 |
Q |
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| T |
13039337 |
gcctttcaagtttctcttaaagttttttggttgattacatgccatggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactct |
13039436 |
T |
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| Q |
513 |
aaaatctagttcat |
526 |
Q |
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|||||||||||||| |
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| T |
13039437 |
aaaatctagttcat |
13039450 |
T |
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Back To:
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