View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13399_low_6 (Length: 322)
Name: NF13399_low_6
Description: NF13399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13399_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 54985810 - 54986129
Alignment:
| Q |
1 |
actaccaattattggaggttgtgcacttgctgctgtcacagaacttaatttcaatatgattggtaagactacattcacttattt-----acatggttgat |
95 |
Q |
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| T |
54985810 |
actaccaattattggaggttgtgcacttgctgctgtcacagaacttaatttcaatatgattggtaagactacattcacttatttaatttacatggttgat |
54985909 |
T |
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| Q |
96 |
tttcagatgctgattgtgttcttctatcatagtagattgaggtgatattggatgctgaatctgtattttgtttgactgatcttatctacgtttcagggtt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54985910 |
tttcagatgctgattgtgttcttctatcatagtagattgagttgatataggatgctgaatctgtattttgtttgactgatcttatctatgtttcagggtt |
54986009 |
T |
|
| Q |
196 |
tatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaactactatgct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986010 |
tatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaactactatgct |
54986109 |
T |
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| Q |
296 |
tgtctctccatattatctct |
315 |
Q |
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|||||||||||||||||||| |
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| T |
54986110 |
tgtctctccatattatctct |
54986129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 7883510 - 7883625
Alignment:
| Q |
185 |
gtttcagggtttatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatga |
284 |
Q |
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| T |
7883510 |
gtttcaggatttatgggagctatgatatcaaatttggcatttgtatttaggaatatattctcaaagaaaggaatgaatggaatgagtgttagtggaatga |
7883609 |
T |
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| Q |
285 |
actactatgcttgtct |
300 |
Q |
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|||| ||||||||||| |
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| T |
7883610 |
actattatgcttgtct |
7883625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 7883377 - 7883437
Alignment:
| Q |
5 |
ccaattattggaggttgtgcacttgctgctgtcacagaacttaatttcaatatgattggta |
65 |
Q |
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| T |
7883377 |
ccaataattggtggttgtgcactagctgctgtaacagaactcaatttcaatatgattggta |
7883437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 18396534 - 18396645
Alignment:
| Q |
187 |
ttcagggtttatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaac |
286 |
Q |
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|||||| |||||||||||||||||||| ||| |||| |||||||| | || || ||||| || ||||| ||||| |||| |||||||||||||||||| |
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| T |
18396534 |
ttcaggttttatgggggctatgatatcaaatctggcatttgtgttccgcaacatcttctcgaaaaaggggatgaagggaaagtctgttagtggaatgaat |
18396633 |
T |
|
| Q |
287 |
tactatgcttgt |
298 |
Q |
| |
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|||||||||||| |
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| T |
18396634 |
tactatgcttgt |
18396645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 18396163 - 18396224
Alignment:
| Q |
5 |
ccaattattggaggttgtgcacttgctgctgtcacagaacttaatttcaatatgattggtaa |
66 |
Q |
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||||| ||||| || ||||||||||||||||| || ||||| |||||||||||||||||||| |
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| T |
18396163 |
ccaatcattggtggatgtgcacttgctgctgtgactgaactcaatttcaatatgattggtaa |
18396224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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