View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13399_low_9 (Length: 256)
Name: NF13399_low_9
Description: NF13399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13399_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 16713982 - 16713803
Alignment:
| Q |
7 |
gcagcacagatggaaaaagttgtgagggacattgatttgctggagtgcgggttcaaacctgcaatactctgcttcacatttagtgtgcgtgagtttcgcc |
106 |
Q |
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| T |
16713982 |
gcagctcagatggaaaaagttgtgagggacattgatttgctggagtgcgggttcaaacctgcaatactctgcttcacatttagtgtgcgtgagtttcgcc |
16713883 |
T |
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| Q |
107 |
gctaagttatttggaagnnnnnnnnnnttcttttatggcagtcaaaaatcagaatttgcccattacagaatatcaaaacg |
186 |
Q |
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| T |
16713882 |
gctaagttatttggaagaaaaaaaaaattcttttatggcagtcaaaaatcagaatttgcccattacagaatatcaaaacg |
16713803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 16713771 - 16713743
Alignment:
| Q |
220 |
cttgattctcactgtgtattcaaaactat |
248 |
Q |
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| T |
16713771 |
cttgattctcactgtgtattcaaaactat |
16713743 |
T |
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