View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_high_3 (Length: 377)
Name: NF1339_high_3
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 32868561 - 32868419
Alignment:
| Q |
106 |
accattgtttacatatatttatttttcaatttttattctaatactaaagttgatttttggtagagtttgtatacagaatgttgttgttattgtctgccta |
205 |
Q |
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| T |
32868561 |
accattgtttacatatatttatttttcaatttttattctaatactaaagttgatttttggtagagtttgtatacagaatgttgttgttattgtctgccta |
32868462 |
T |
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| Q |
206 |
atttggaagtgattgaaccttgacacatttcatgtcgaagcaa |
248 |
Q |
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| T |
32868461 |
atttggaagtgattgaacattgacacatttcatgtcgaagcaa |
32868419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 32868394 - 32868338
Alignment:
| Q |
310 |
aaaaatgaaaatttatatgaaaattcaaacactaacaccagggacggatgtattcat |
366 |
Q |
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| T |
32868394 |
aaaaaagagaatttatatgaaaattcaaacactaacaccagggacggatgtattcat |
32868338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 338
Target Start/End: Original strand, 50821181 - 50821258
Alignment:
| Q |
260 |
tttgatttttatgacatagatctatcaaaaaagtacatgatattgagtagaaaaatgaaaatttatatgaaaattcaaa |
338 |
Q |
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| T |
50821181 |
tttgatttttatgaaacaaatctattaaaaaa-tacatgatatttagtagataaatgagaatttctatgaaaattcaaa |
50821258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 50854680 - 50854603
Alignment:
| Q |
260 |
tttgatttttatgacatagatctatcaaaaaagtacatgatattgagtagaaaaatgaaaatttatatgaaaattcaaa |
338 |
Q |
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| T |
50854680 |
tttgatttttatgaaacaaatctattaaaaaa-tacatgatatttagtagataaatgagaatttctatgaaaattcaaa |
50854603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 50821271 - 50821312
Alignment:
| Q |
306 |
gtagaaaaatgaaaatttatatgaaaattcaaacactaacac |
347 |
Q |
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| T |
50821271 |
gtagataaatgagaatttctatgaaaattcaaacactaacac |
50821312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 50854590 - 50854549
Alignment:
| Q |
306 |
gtagaaaaatgaaaatttatatgaaaattcaaacactaacac |
347 |
Q |
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| T |
50854590 |
gtagataaatgagaatttctatgaaaattcaaacactaacac |
50854549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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