View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1339_high_4 (Length: 318)
Name: NF1339_high_4
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 41359858 - 41359694
Alignment:
| Q |
77 |
tcataggttctaagacacacttgatatttttgaatggtataatactcctacactcctaaatatacacaaaaattcaaatgtatttgttcgaaannnnnnn |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359858 |
tcataggttctaagacacacttgatatttttgaatggtataatactcctacacttctaaatatacacaaaaattcaaatgtatttgttcgaaa-tttgac |
41359760 |
T |
|
| Q |
177 |
nnnnnatttatatttcagatcaaagagaatacatctgattgaaaatgattctctagactaacttgt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
41359759 |
tttttatttatatttcagatcaaagagaatacatctcatggaaaatgattctctagactaacttgt |
41359694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University