View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_high_7 (Length: 306)
Name: NF1339_high_7
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 4917616 - 4917859
Alignment:
| Q |
29 |
aaaaagtaacgttgaaaatatttattttttatatggaaatgttagtagattgttagaaggcaagaagaattgttaagtctgtgaagattaaacgagagac |
128 |
Q |
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| T |
4917616 |
aaaaagtaacgttgaaaatatttattttttatatggaaatgttagtagattgttagaaggcaagaagaattgttaagtctgtaaagattaaacgagagac |
4917715 |
T |
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| Q |
129 |
gtttttcctaaattttatttaatgtttttagctcaccaaataagctatctacattaacgcggaccataagaaaatatatcctattaaaataatccctaac |
228 |
Q |
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| T |
4917716 |
gttcttcctaaatttcatttaatgtttttagctcaccaagtaagctatctacattaacgcggaccataagaaaatatatcctattaaaataatccctaac |
4917815 |
T |
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| Q |
229 |
actttaaatttaagattaaccaacaaaattttatttaatttata |
272 |
Q |
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| T |
4917816 |
actttaaatttaagactaaccaacaaaattttatttaatttata |
4917859 |
T |
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