View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_high_8 (Length: 291)
Name: NF1339_high_8
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 17319925 - 17319779
Alignment:
| Q |
32 |
caaaggataagttagtccctctagcaaaagctaaattccatggactgggtgagccaaacaccgcacccaaatcatctttttaagcactcgttcgggttcc |
131 |
Q |
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| T |
17319925 |
caaaggataagttagtctccctagcaaaagctaaattccatggactgggtgagccaaacaccgcacccaaatcatctttttaagcactcgttcgggttcc |
17319826 |
T |
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| Q |
132 |
aactccactcatagaagatacaaggagatatattcaatctacttaaa |
178 |
Q |
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| T |
17319825 |
aactccactcatagaagatacagggagatatattcaatctacttaaa |
17319779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 6437892 - 6437966
Alignment:
| Q |
123 |
tcgggttccaactccactcatagaagatacaaggagatatattcaatctacttaaacacaaatgccaagataaca |
197 |
Q |
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| T |
6437892 |
tcgggttccaacaccactcatagaacaaacaagttgctatattcaattttcttaaactccaatgccaagacaaca |
6437966 |
T |
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