View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_10 (Length: 442)
Name: NF1339_low_10
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 94 - 297
Target Start/End: Complemental strand, 35815078 - 35814875
Alignment:
| Q |
94 |
aaagaaacaattaattatataggcatcaatattatatatgacaaacttataaccatccatatatcttaataattgttttccttgtnnnnnnnnnnnnnnn |
193 |
Q |
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| T |
35815078 |
aaagaaacaattaattatataggcatcaatattatatatgacaaacttataaccatccatatatcttaataatttttttccttgtaaaaaaacaaaaaaa |
35814979 |
T |
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| Q |
194 |
gcttaccatcaatatatagggtgatatatatatctcaattataagaatcttgttgcttgacacaagcaccttgatctgcttgagtagtccctttaatttg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35814978 |
gcttaccatcaatatatagggtgatatatatatctcaattataagaatcttgttgcttgacacaagcaccttgatctgcttgagtagtccctttaatttg |
35814879 |
T |
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| Q |
294 |
gtaa |
297 |
Q |
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|||| |
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| T |
35814878 |
gtaa |
35814875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 324 - 440
Target Start/End: Complemental strand, 35814848 - 35814732
Alignment:
| Q |
324 |
atatgggatccctcttgccttttgctgactatccttcacctcacgaaggtaaacccgaatagctcctccggcaaaggggttagtctccgatgatccaccg |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35814848 |
atatgggatccctcttgccttttgctgactatccttcacctcacgaaggtaaacccgaatagctcctccggcaaaggggttagtctccgatgatccaccg |
35814749 |
T |
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| Q |
424 |
ttctcttcgtaggcagc |
440 |
Q |
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||||||||||||||||| |
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| T |
35814748 |
ttctcttcgtaggcagc |
35814732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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