View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1339_low_11 (Length: 426)

Name: NF1339_low_11
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1339_low_11
NF1339_low_11
[»] scaffold0356 (2 HSPs)
scaffold0356 (201-336)||(4769-4905)
scaffold0356 (102-172)||(4934-5004)
[»] chr8 (4 HSPs)
chr8 (201-336)||(14107347-14107483)
chr8 (201-336)||(33857095-33857231)
chr8 (102-172)||(14107512-14107582)
chr8 (102-154)||(33857261-33857313)
[»] chr4 (2 HSPs)
chr4 (201-336)||(31925838-31925974)
chr4 (102-154)||(31925756-31925808)
[»] chr3 (4 HSPs)
chr3 (201-336)||(41759077-41759213)
chr3 (214-326)||(11817736-11817848)
chr3 (102-154)||(41759243-41759295)
chr3 (112-153)||(11817570-11817611)
[»] chr1 (2 HSPs)
chr1 (201-336)||(16046049-16046185)
chr1 (103-172)||(16045951-16046020)
[»] scaffold0003 (2 HSPs)
scaffold0003 (214-326)||(190763-190875)
scaffold0003 (112-153)||(190596-190637)
[»] scaffold0316 (2 HSPs)
scaffold0316 (214-326)||(5939-6049)
scaffold0316 (104-148)||(5756-5800)


Alignment Details
Target: scaffold0356 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 4905 - 4769
Alignment:
Q  201 tgcaagacaatattt-gattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaac 299  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  4905 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggcgaaggatttgaac 4806  T
Q  300 cacaatgttcattgtctcttaagaagatatataattg 336  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4805 cacaatgttcattgtctcttaagaagatctataattg 4769  T

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Target: scaffold0356; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 5004 - 4934
Alignment:
Q  102 ctaatcttggtaattttgattatagatggaacaattttcaattttaatgttacatcaccaataacgttact 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5004 ctaatcttgataattttgattatagatggaacaattttcaattttaatgtcacatcaccaataacgttact 4934  T

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Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 14107483 - 14107347
Alignment:
Q  201 tgcaagacaatattt-gattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaac 299  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  14107483 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggcgaaggatttgaac 14107384  T
Q  300 cacaatgttcattgtctcttaagaagatatataattg 336  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14107383 cacaatgttcattgtctcttaagaagatctataattg 14107347  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 33857231 - 33857095
Alignment:
Q  201 tgcaagacaatattt-gattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaac 299  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||    
T  33857231 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttgaac 33857132  T
Q  300 cacaatgttcattgtctcttaagaagatatataattg 336  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33857131 cacaatgttcattgtctcttaagaagatctataattg 33857095  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 14107582 - 14107512
Alignment:
Q  102 ctaatcttggtaattttgattatagatggaacaattttcaattttaatgttacatcaccaataacgttact 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14107582 ctaatcttgataattttgattatagatggaacaattttcaattttaatgtcacatcaccaataacgttact 14107512  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 33857313 - 33857261
Alignment:
Q  102 ctaatcttggtaattttgattatagatggaacaattttcaattttaatgttac 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33857313 ctaatcttggtaattttgattatagatggaacaattttcaattttaacgttac 33857261  T

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Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 31925838 - 31925974
Alignment:
Q  201 tgcaagacaatattt-gattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaac 299  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||    
T  31925838 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttgaac 31925937  T
Q  300 cacaatgttcattgtctcttaagaagatatataattg 336  Q
    |||||||||||||||||||||||||||| ||||||||    
T  31925938 cacaatgttcattgtctcttaagaagatctataattg 31925974  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 31925756 - 31925808
Alignment:
Q  102 ctaatcttggtaattttgattatagatggaacaattttcaattttaatgttac 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31925756 ctaatcttggtaattttgattatagatggaacaattttcaattttaacgttac 31925808  T

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Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 41759213 - 41759077
Alignment:
Q  201 tgcaagacaatattt-gattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaac 299  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||    
T  41759213 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttgaac 41759114  T
Q  300 cacaatgttcattgtctcttaagaagatatataattg 336  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41759113 cacaatgttcattgtctcttaagaagatctataattg 41759077  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 11817736 - 11817848
Alignment:
Q  214 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaaccacaatgttcattg 313  Q
    |||||||||||||||||| |||||||||| ||||| || |||| | ||||| ||||||||||||| | ||||| |||||||||||| |  ||||||  ||    
T  11817736 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtcccacacaaagtcatagggcgaaggatttgaactatcatgttccatg 11817835  T
Q  314 tctcttaagaaga 326  Q
    |||||||| ||||    
T  11817836 tctcttaaaaaga 11817848  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 41759295 - 41759243
Alignment:
Q  102 ctaatcttggtaattttgattatagatggaacaattttcaattttaatgttac 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41759295 ctaatcttggtaattttgattatagatggaacaattttcaattttaacgttac 41759243  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 11817570 - 11817611
Alignment:
Q  112 taattttgattatagatggaacaattttcaattttaatgtta 153  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  11817570 taattttgattatagatggaacaattttcaattttaacgtta 11817611  T

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Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 16046049 - 16046185
Alignment:
Q  201 tgcaagacaatattt-gattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaac 299  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||| ||||||||    
T  16046049 tgcaagacaatcttttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacacagtcatagggcgaagaatttgaac 16046148  T
Q  300 cacaatgttcattgtctcttaagaagatatataattg 336  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  16046149 cacaattttcattgtctcttaagaagatctataattg 16046185  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 16045951 - 16046020
Alignment:
Q  103 taatcttggtaattttgattatagatggaacaattttcaattttaatgttacatcaccaataacgttact 172  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||||||    
T  16045951 taatcttggtaattttgattatagatggaacaatttttaattttaatgtcaaatcacctataatgttact 16046020  T

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Target: scaffold0003 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 190763 - 190875
Alignment:
Q  214 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaaccacaatgttcattg 313  Q
    |||||||||||||||||| |||||||||| ||||| || |||| | ||||| ||||||| ||||| | ||||| ||||||||||||||  ||||||  ||    
T  190763 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtcccacagaaagtcatagggcgaaggatttgaaccatcatgttccatg 190862  T
Q  314 tctcttaagaaga 326  Q
    |||||||| ||||    
T  190863 tctcttaaaaaga 190875  T

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Target: scaffold0003; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 190596 - 190637
Alignment:
Q  112 taattttgattatagatggaacaattttcaattttaatgtta 153  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  190596 taattttgattatagatggaacaattttcaattttaacgtta 190637  T

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Target: scaffold0316 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 5939 - 6049
Alignment:
Q  214 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagttacagggcaaaggatttgaaccacaatgttcattg 313  Q
    ||||||||||||||||  ||||||||||| ||||| || |||| | ||||| ||||||||||||| | || |  ||||||||||||||  ||||||  ||    
T  5939 ttgattcattaaaacc--ttctaaagatttagaaagtttgtctctattcatgtcccacacaaagtcatagagtgaaggatttgaaccatgatgttccatg 6036  T
Q  314 tctcttaagaaga 326  Q
    |||||||| ||||    
T  6037 tctcttaaaaaga 6049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 5756 - 5800
Alignment:
Q  104 aatcttggtaattttgattatagatggaacaattttcaattttaa 148  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||    
T  5756 aatcttgataattttgattatagatggaacagttttcaattttaa 5800  T

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