View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_12 (Length: 414)
Name: NF1339_low_12
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 50 - 388
Target Start/End: Complemental strand, 25457640 - 25457303
Alignment:
| Q |
50 |
gtataaagaaggtgaagtagttttgataagccattgttttgtgatgttagctaggggtgttcttgttctttaaatacttgagagctaagacaaatgttta |
149 |
Q |
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| T |
25457640 |
gtataaagaaggtgaagtagttttgataagccattgttttgtgatgttagctgggggttttgttgttctttaaatacttgagagctaagacaaatgttta |
25457541 |
T |
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| Q |
150 |
aaaatctttagattctcacgattcgaagattgatttaatttttaagacattattatatggatccgtgattggtttctactttctaggagttgacaaaatt |
249 |
Q |
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| T |
25457540 |
aaaatcttaagattctcacgattcgaagattgattcaatttttaagacattattatatggatccgtgattggtttctactttctaggagttgacaaaatt |
25457441 |
T |
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| Q |
250 |
gttaaaatcgtaaactattaattattttagtatag--nnnnnnnnnnnnnnnaagtttactttagtatagtcaaatataagaaattagtcctcgtgagct |
347 |
Q |
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| T |
25457440 |
gttaaaatcgtaaactattaattattttagtatagttttttttttttttttaaagtttactttagtatagtcaaatatttgcaattagt-ctcgtgagct |
25457342 |
T |
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| Q |
348 |
tacctaagttggtagggacgatgtaagattcgaggttcaaa |
388 |
Q |
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| T |
25457341 |
tacc--agttggtaggtacgatgtaaggtttgaggttcaaa |
25457303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 45032681 - 45032718
Alignment:
| Q |
329 |
aaattagtcctcgtgagcttacctaagttggtagggac |
366 |
Q |
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| T |
45032681 |
aaatttgtcctcgtgagcttacctcagttggtagggac |
45032718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 10735899 - 10735863
Alignment:
| Q |
334 |
agtcctcgtgagcttacctaagttggtagggacgatg |
370 |
Q |
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| T |
10735899 |
agtcctcgtgagcttagctcagttggtagggacgatg |
10735863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 16390418 - 16390454
Alignment:
| Q |
330 |
aattagtcctcgtgagcttacctaagttggtagggac |
366 |
Q |
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| T |
16390418 |
aattggtcctcgtgagcttacctcagttggtagggac |
16390454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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