View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_13 (Length: 407)
Name: NF1339_low_13
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 86 - 310
Target Start/End: Complemental strand, 945592 - 945369
Alignment:
| Q |
86 |
agaggagcactttgaccaactaatagttttcgaaattgaggaactataccaattattactccaaatatctgcatgaatatattcttaaatcaacatcaca |
185 |
Q |
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| T |
945592 |
agaggagcactttgaccaactagtagttttcgaaattgaggaactataccaattattactccaaacatctgcatgaatatattcttaaatcaacatcaca |
945493 |
T |
|
| Q |
186 |
atgtatctcttaagtttagtgtataataatcaacttgttagaagtttgtttaaagtagacattaacattaactcaagcatatcaaatgaacaattagtgc |
285 |
Q |
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| T |
945492 |
atgtatctcttaagtttagtgtataataatcaacttgtt-gaagtttgtttaaagtagacattaacattaactcaagcatatcaaatgaacaattagtgc |
945394 |
T |
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| Q |
286 |
taggagttaatttgaataaacttct |
310 |
Q |
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| T |
945393 |
taggagttaatttgaataaacttct |
945369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 140 - 310
Target Start/End: Complemental strand, 4098525 - 4098348
Alignment:
| Q |
140 |
attactccaaatatctgcatgaatatattcttaaatc-aacatcacaatgtatctcttaagtttagtgtataataatcaacttgttagaagtttg----- |
233 |
Q |
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||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||| |||||||| |
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| T |
4098525 |
attactccaaaaatctgcatgaatatattcttaaatcaaagatcacaatgtatctcttaagattagtgtataacaatcaactagtt-gaagtttgtttaa |
4098427 |
T |
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| Q |
234 |
--tttaaagtagacattaacattaactcaagcatatcaaatgaacaattagtgctaggagttaatttgaataaacttct |
310 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
4098426 |
actttaaagtagacgttaacattaactcaagcatatcaaatgaacaattagtgatgggagttagtttgaataaacttct |
4098348 |
T |
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