View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_16 (Length: 400)
Name: NF1339_low_16
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 6076221 - 6075841
Alignment:
| Q |
5 |
catgtatgagttatcttactatcttaatagaatttnnnnnnnnnntcttttatttagaaatggattgaccaaatctagaattatgttttcgaccatcact |
104 |
Q |
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| T |
6076221 |
catgtctgagttatcttactatcttaatagaattaaaaaaaaaaatcttttatttagaaatggattgaccaaatctagaattatgttttcgactatcact |
6076122 |
T |
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| Q |
105 |
gcttattaattaatctgtacaataccacaacaatacaatcatataattaaatgcataataatttgctgtaatcgtagttattatttgcaaattatactcc |
204 |
Q |
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| T |
6076121 |
gcttattaattaatctgtacaataccacaacaatacaatcatataattaaatgcataataatttgctgtaatcgtagttattatttgcaaattatactcc |
6076022 |
T |
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| Q |
205 |
acacatttggaattttgtttcacaaaccgtacatatagtaggtatatacagaaaatataaagcgtggatgaatttgatccaaatatttgctcttggtctg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6076021 |
acacatttggaattttgtttcacaaaccgtacatatagtaggtatatacagaaaatataaagcgtggatgaatttgatccaaatatttgctcttggtttg |
6075922 |
T |
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| Q |
305 |
tacaacaaatataattgaccactgtatcgtttggtaagcatcaatacgttgcacgagttatctaaaactaacccctttcac |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6075921 |
tacaacaaatataattgaccactgtatcgtttggtaagcatcaatacgttgcacgagttatctaaaactaacccctttcac |
6075841 |
T |
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