View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1339_low_17 (Length: 398)

Name: NF1339_low_17
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1339_low_17
NF1339_low_17
[»] chr2 (3 HSPs)
chr2 (86-315)||(4243048-4243263)
chr2 (111-232)||(647269-647389)
chr2 (86-222)||(42703924-42704060)
[»] chr5 (7 HSPs)
chr5 (87-227)||(33496284-33496425)
chr5 (86-232)||(42577960-42578106)
chr5 (120-222)||(13093675-13093777)
chr5 (120-222)||(13022151-13022253)
chr5 (117-199)||(23150040-23150122)
chr5 (95-232)||(14277195-14277332)
chr5 (105-235)||(7273756-7273886)
[»] chr1 (9 HSPs)
chr1 (95-235)||(14647356-14647496)
chr1 (86-235)||(12459979-12460128)
chr1 (105-222)||(13189541-13189658)
chr1 (95-232)||(51492973-51493110)
chr1 (105-224)||(20128381-20128500)
chr1 (86-222)||(27644553-27644689)
chr1 (119-193)||(50181614-50181688)
chr1 (114-185)||(27465617-27465688)
chr1 (120-235)||(44138466-44138581)
[»] chr3 (7 HSPs)
chr3 (86-232)||(52966051-52966197)
chr3 (95-232)||(51141345-51141482)
chr3 (94-196)||(2500419-2500521)
chr3 (94-199)||(2332410-2332514)
chr3 (139-220)||(24596131-24596212)
chr3 (150-195)||(4755709-4755754)
chr3 (86-178)||(39695229-39695321)
[»] chr7 (8 HSPs)
chr7 (114-232)||(46598537-46598655)
chr7 (114-232)||(31801220-31801338)
chr7 (126-232)||(512590-512696)
chr7 (94-199)||(12351941-12352046)
chr7 (117-199)||(41146525-41146607)
chr7 (120-222)||(43968796-43968898)
chr7 (99-235)||(18222698-18222834)
chr7 (121-231)||(31402552-31402662)
[»] chr6 (3 HSPs)
chr6 (95-232)||(21731033-21731170)
chr6 (86-235)||(16861976-16862125)
chr6 (126-196)||(10160191-10160261)
[»] scaffold0703 (1 HSPs)
scaffold0703 (86-235)||(871-1020)
[»] chr4 (4 HSPs)
chr4 (105-232)||(54422625-54422752)
chr4 (117-199)||(32498317-32498399)
chr4 (155-232)||(29016903-29016980)
chr4 (120-201)||(43732685-43732766)
[»] chr8 (3 HSPs)
chr8 (126-196)||(9181967-9182037)
chr8 (126-196)||(11626236-11626306)
chr8 (126-225)||(29929639-29929738)
[»] scaffold0007 (1 HSPs)
scaffold0007 (114-196)||(189602-189684)
[»] scaffold0010 (1 HSPs)
scaffold0010 (87-235)||(237888-238036)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 86 - 315
Target Start/End: Complemental strand, 4243263 - 4243048
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4243263 aggcatggtccatagatttattttcgagccatctccaat-ttccatctatgacccaaagtgagcaaagattgagtactccatagactcctccatgtatag 4243165  T
Q  186 catggattatgaccaatcggtgcatccaagaaatcccgtctagggaaataactcagtttaatcttataaagccataaaatcgataataaaatgtgtaaca 285  Q
    | ||||||||||||||||             | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4243164 cttggattatgaccaatc-------------agtcccgtctagggaaataactcagtttaatcttataaagccataaaatcgataataaaatgtgtaaca 4243078  T
Q  286 ttagttacagatagcattgagagatattag 315  Q
    |||||||||||||||| |||||||||||||    
T  4243077 ttagttacagatagcactgagagatattag 4243048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 647389 - 647269
Alignment:
Q  111 gagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcat 210  Q
    |||||||| ||||| ||||||||||  ||||| || || ||| ||||||||||||||||||||||||| || |||| ||| || || || |  || || |    
T  647389 gagccatcaccaat-ttccatctatatcccaatgtaagtaaagattgagtactccatagactcctccaagtgtagcttgggttgtggcccagaggggcct 647291  T
Q  211 ccaagaaatcccgtctagggaa 232  Q
    |||||||||| |||||||||||    
T  647290 ccaagaaatctcgtctagggaa 647269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 42703924 - 42704060
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    ||||||| |||| ||||| ||||| |  ||||| ||||| ||| || |||||||||| || ||||| | ||| |||||||| ||||| ||||| ||| ||    
T  42703924 aggcatgttccacacattaattttggcaccatcaccaatcttcaatatatgacccaatgtaagcaagtgttgggtactccaaagacttctccaagtaaag 42704023  T
Q  186 catggattatgaccaatcggtgcatccaagaaatccc 222  Q
    | ||||||||| ||||| ||  | |||||||||||||    
T  42704024 cttggattatggccaatagggacctccaagaaatccc 42704060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 33496284 - 33496425
Alignment:
Q  87 ggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaata-ttgagtactccatagactcctccatgtatag 185  Q
    |||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||    
T  33496284 ggcatggtacatagatttattttcgagccatctccaatcttccatctatgacccaaagtgagcaaatatttgagtactccatggactcctccatgtgtag 33496383  T
Q  186 catggattatgaccaatcggtgcatccaagaaatcccgtcta 227  Q
    | ||||||||||||||||||| | ||||| ||||||| ||||    
T  33496384 cttggattatgaccaatcggttcgtccaataaatcccatcta 33496425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 42577960 - 42578106
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    |||||| | |||||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||| ||||||| ||||| |||||||||||||| |||    
T  42577960 aggcatagaccatacatttatgtttgaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctccatgtgtag 42578059  T
Q  186 catggattatgaccaatcggtgcatccaagaaatcccgtctagggaa 232  Q
    | ||||||||| ||||  || |||||||||||||||| |||||||||    
T  42578060 cttggattatggccaagaggggcatccaagaaatcccttctagggaa 42578106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 13093675 - 13093777
Alignment:
Q  120 ccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaat 219  Q
    ||||| |||||||||| ||||||||| ||||||| |||||||||||| ||| ||||||| ||| ||| |||||||||||| |  |  |||||||||||||    
T  13093675 ccaattttccatctataacccaaagtaagcaaatgttgagtactccaaagattcctccaagtaaagcttggattatgaccgagggaggcatccaagaaat 13093774  T
Q  220 ccc 222  Q
    |||    
T  13093775 ccc 13093777  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 13022151 - 13022253
Alignment:
Q  120 ccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaat 219  Q
    ||||| |||||||||| ||||||||| || |||| |||||||||||| ||| ||||||| ||| ||| |||||||||||| |  |  |||||||||||||    
T  13022151 ccaattttccatctataacccaaagtaagaaaatgttgagtactccaaagattcctccaagtaaagcttggattatgaccgagggaggcatccaagaaat 13022250  T
Q  220 ccc 222  Q
    |||    
T  13022251 ccc 13022253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 23150122 - 23150040
Alignment:
Q  117 tctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgacc 199  Q
    |||||||| ||||| ||||| ||||| || || ||| |||||||||||||||||||||||||||| || | ||||||||||||    
T  23150122 tctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatgtgtaacttggattatgacc 23150040  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 14277195 - 14277332
Alignment:
Q  95 ccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatta 194  Q
    ||||| |||||||||||| ||  ||||||| ||||||||||||||||| ||   || | ||||||||||||| ||||||||||   | |||| |||||||    
T  14277195 ccataaatttatttttgaaccgcctccaatcttccatctatgacccaatgtatacagagattgagtactccaaagactcctccggatgtagcttggatta 14277294  T
Q  195 tgaccaatcggtgcatccaagaaatcccgtctagggaa 232  Q
    |||||||  ||  |||||||||| ||||| | ||||||    
T  14277295 tgaccaagagggacatccaagaagtcccgacaagggaa 14277332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 7273886 - 7273756
Alignment:
Q  105 atttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcg 204  Q
    ||||| || ||||||| ||| ||||||| ||||||||| || || |||| ||| |||||||| || || |||||||| |||| ||||||||| || |  |    
T  7273886 attttggaaccatctctaatcttccatccatgacccaaggtaagtaaatgttgtgtactccaaaggcttctccatgtgtagcttggattatggccgagag 7273787  T
Q  205 gtgcatccaagaaatcccgtctagggaaata 235  Q
      |||||||||||||||| ||  ||||||||    
T  7273786 aggcatccaagaaatcccttcgtgggaaata 7273756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 14647496 - 14647356
Alignment:
Q  95 ccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatta 194  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| | ||||||||||||| |||||||||||| | |||| |||||||    
T  14647496 ccatacatttatttttgaaccatctccaattttccatctatgacccaaggtaagcagagattgagtactccaaagactcctccatatgtagcttggatta 14647397  T
Q  195 tgaccaatcggtgcatccaagaaatcccgtctagggaaata 235  Q
    ||| |||  |||||||||||||| ||||| | |||||||||    
T  14647396 tgatcaagaggtgcatccaagaagtcccgacgagggaaata 14647356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 12459979 - 12460128
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    |||||| | ||| |||||||||||||||||||  ||||| ||||||||||  ||||| || || ||  |||| |||||||| ||||||||||||||||||    
T  12459979 aggcattgaccacacatttatttttgagccattaccaatcttccatctatagcccaacgtaagtaatgattgggtactccaaagactcctccatgtatag 12460078  T
Q  186 catggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata 235  Q
    | ||||||||||||||  ||||| |||||||||||||||| |||||||||    
T  12460079 cttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaata 12460128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 13189541 - 13189658
Alignment:
Q  105 atttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcg 204  Q
    ||||| |||||||||||||| |||||||||| |||||| || || |||| |||||||||||| ||||| ||||| || |||| ||||||||| ||||| |    
T  13189541 attttagagccatctccaattttccatctataacccaaggtaagtaaatgttgagtactccaaagacttctccaagtgtagcttggattatggccaatag 13189640  T
Q  205 gtgcatccaagaaatccc 222  Q
    ||||||||||||| ||||    
T  13189641 gtgcatccaagaagtccc 13189658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 51492973 - 51493110
Alignment:
Q  95 ccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatta 194  Q
    |||||||||||| ||||| ||| ||||||| ||||||||||||||||| || || ||| ||||||| ||||| |||| ||||||||  |||| |||||||    
T  51492973 ccatacatttatgtttgaaccagctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagacccctccatgcgtagcttggatta 51493072  T
Q  195 tgaccaatcggtgcatccaagaaatcccgtctagggaa 232  Q
    || ||||  || |||||||||||||||  |||||||||    
T  51493073 tggccaagaggggcatccaagaaatccattctagggaa 51493110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 20128500 - 20128381
Alignment:
Q  105 atttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcg 204  Q
    ||||||| |||||| ||||| ||||||||||| ||||| || || | | |||| |||||||||||||||||||| || |||| ||||||||||||||  |    
T  20128500 atttttgtgccatcaccaatcttccatctatgtcccaaggtaagaagagattgggtactccatagactcctccaagtgtagcttggattatgaccaagag 20128401  T
Q  205 gtgcatccaagaaatcccgt 224  Q
    |||| |||||||||||||||    
T  20128400 gtgcttccaagaaatcccgt 20128381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 27644553 - 27644689
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    |||||| ||||| ||||||||||| || |||| |||||| ||||| || || || || || ||||| |  || |||||||| ||||||||||| ||||||    
T  27644553 aggcatagtccacacatttattttggaaccatttccaatcttccacctgtgtcctaaggtaagcaagtgctgggtactccaaagactcctccaagtatag 27644652  T
Q  186 catggattatgaccaatcggtgcatccaagaaatccc 222  Q
    | ||||||||||||||  |  ||||||||||||||||    
T  27644653 cttggattatgaccaagagaggcatccaagaaatccc 27644689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 50181688 - 50181614
Alignment:
Q  119 tccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatt 193  Q
    |||||| ||||||||||| || || || || ||| |||| |||||||||||||||||||||||||| | ||||||    
T  50181688 tccaatcttccatctatggcctaaggtaagtaaagattgcgtactccatagactcctccatgtataacttggatt 50181614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 27465688 - 27465617
Alignment:
Q  114 ccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    ||||| ||||| ||||||  |||||||||| | || ||| |||||||||||||||||||| |||| ||||||    
T  27465688 ccatcaccaattttccattcatgacccaaaataagtaaagattgagtactccatagactcttccaagtatag 27465617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 44138581 - 44138466
Alignment:
Q  120 ccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaat 219  Q
    ||||| ||||||||||| ||||| || || |||| ||| | ||||||||| || ||||| || |||| ||||||||| || |  || |||||||||||||    
T  44138581 ccaatcttccatctatgtcccaaggtaagtaaatgttgtgcactccataggcttctccaggtgtagcttggattatggccgagaggggcatccaagaaat 44138482  T
Q  220 cccgtctagggaaata 235  Q
    ||| ||  ||||||||    
T  44138481 cccttcgcgggaaata 44138466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 52966051 - 52966197
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    |||||| | |||||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||| ||||||| ||||| |||||||||||||| |||    
T  52966051 aggcatagaccatacatttatgtttgaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctccatgtgtag 52966150  T
Q  186 catggattatgaccaatcggtgcatccaagaaatcccgtctagggaa 232  Q
    | ||||||||| ||||  || |||||||||||||||| |||||||||    
T  52966151 cttggattatggccaagaggggcatccaagaaatcccttctagggaa 52966197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 51141345 - 51141482
Alignment:
Q  95 ccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatta 194  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||||| ||| | |||||||| || | |||||||    
T  51141345 ccatacatttatttttgaaccatctccaatcttccatctatgacccaaggtaagcagatattgagtactccaaagaattctccatgtgtaacttggatta 51141444  T
Q  195 tgaccaatcggtgcatccaagaaatcccgtctagggaa 232  Q
    |||||||| || ||||||||||| ||||| | ||||||    
T  51141445 tgaccaataggggcatccaagaagtcccgacgagggaa 51141482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 2500419 - 2500521
Alignment:
Q  94 tccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatt 193  Q
    |||| ||||| ||||  ||||| |||||||| ||||| ||||| ||||| || || ||| |||||||||||||||||||||||||||| || | ||||||    
T  2500419 tccacacattaatttgagagccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatgtgtaacttggatt 2500518  T
Q  194 atg 196  Q
    |||    
T  2500519 atg 2500521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 2332514 - 2332410
Alignment:
Q  94 tccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatt 193  Q
    |||| ||||| ||||| |||||||| ||||| |||||||||| |  ||| || || |||| || ||||||||| ||||||||||| ||||||| ||||||    
T  2332514 tccacacattaattttagagccatcaccaattttccatctataatacaaggtaagtaaatgtt-agtactccaaagactcctccaagtatagcttggatt 2332416  T
Q  194 atgacc 199  Q
    ||||||    
T  2332415 atgacc 2332410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 24596131 - 24596212
Alignment:
Q  139 ccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatc 220  Q
    ||||||| || ||| |||| | |||||| |||||||||||||| |||| |||||| |||||||  |||||||||||||||||    
T  24596131 ccaaagtaagtaaagattgggcactccaaagactcctccatgtgtagcttggattgtgaccaaaaggtgcatccaagaaatc 24596212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 4755709 - 4755754
Alignment:
Q  150 aaatattgagtactccatagactcctccatgtatagcatggattat 195  Q
    |||| ||| |||||||| ||||||||||||||||||| ||||||||    
T  4755709 aaattttgggtactccaaagactcctccatgtatagcttggattat 4755754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 39695229 - 39695321
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctcca 178  Q
    ||||||| | || ||||| ||||| ||||| || ||||| |||||| ||||||||||| | ||  | | |||||||||||| |||||||||||    
T  39695229 aggcatgtttcacacattaattttagagccgtcaccaatcttccatatatgacccaaaataagtcattgttgagtactccaaagactcctcca 39695321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 46598655 - 46598537
Alignment:
Q  114 ccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatcca 213  Q
    ||||||||||| ||||||||||| |||||||| || ||| |||||||||||||||  |||||||| ||||||| |||||||||||| |  | ||||||||    
T  46598655 ccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcctccaggtatagcttggattatgaccgagggttgcatcca 46598556  T
Q  214 agaaatcccgtctagggaa 232  Q
    |||| ||||||||||||||    
T  46598555 agaagtcccgtctagggaa 46598537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 31801338 - 31801220
Alignment:
Q  114 ccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatcca 213  Q
    ||||||||||| ||||||||||| |||||||| || ||| |||||||||||||||  |||||||| ||||||| |||||||||||| |  |  |||||||    
T  31801338 ccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcctccaagtatagcttggattatgaccgagggtagcatcca 31801239  T
Q  214 agaaatcccgtctagggaa 232  Q
    |||| ||| ||||||||||    
T  31801238 agaagtccagtctagggaa 31801220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 512696 - 512590
Alignment:
Q  126 ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtc 225  Q
    ||||||||||| |||||||| || ||| |||||||||||||||  ||||| || ||||||| |||||||||||| |  | |||||||||||| |||||||    
T  512696 ttccatctatggcccaaagtaagtaaagattgagtactccataagctccttcaggtatagcttggattatgaccgagggttgcatccaagaagtcccgtc 512597  T
Q  226 tagggaa 232  Q
    |||||||    
T  512596 tagggaa 512590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 12351941 - 12352046
Alignment:
Q  94 tccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatt 193  Q
    |||| ||||| ||||  ||||| |||||||| ||||| ||||| ||||| || || ||| |||||||||||||||||||||||||||| || | ||||||    
T  12351941 tccacacattaatttgagagccgtctccaattttccagctatggcccaaggtaagtaaagattgagtactccatagactcctccatgtgtaacttggatt 12352040  T
Q  194 atgacc 199  Q
    ||||||    
T  12352041 atgacc 12352046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 41146607 - 41146525
Alignment:
Q  117 tctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgacc 199  Q
    |||||||| ||||| ||||| ||||| || || ||| |||||||||||||||||||||||||||| || | ||||||||||||    
T  41146607 tctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatgtgtaacttggattatgacc 41146525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 43968898 - 43968796
Alignment:
Q  120 ccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaat 219  Q
    ||||| |||||| ||| ||||||||| ||||||| |||||||||||| |||||||| || ||| ||| |||||||||||| |  |  |||||||||||||    
T  43968898 ccaattttccatatataacccaaagtaagcaaatgttgagtactccaaagactccttcaagtaaagcttggattatgaccgagggaggcatccaagaaat 43968799  T
Q  220 ccc 222  Q
    |||    
T  43968798 ccc 43968796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 235
Target Start/End: Original strand, 18222698 - 18222834
Alignment:
Q  99 acatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgac 198  Q
    ||||||||||| |  || |||||||| ||||||||||| ||||| || || ||  ||||| ||||||| ||||||||||| ||||||| ||||||||| |    
T  18222698 acatttattttagtaccgtctccaatcttccatctatgccccaaggtaagtaatgattgaatactccaaagactcctccaagtatagcttggattatggc 18222797  T
Q  199 caatcggtgcatccaagaaatcccgtctagggaaata 235  Q
    | |  |  |||||||||||||||| ||  ||||||||    
T  18222798 cgagagaggcatccaagaaatcccttcgcgggaaata 18222834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 31402662 - 31402552
Alignment:
Q  121 caatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatc 220  Q
    |||| |||||||||| |||||||||||  |  | ||| | |||||| |  |||||||||||| ||| |||||||||||||||   ||||||| ||| |||    
T  31402662 caatcttccatctataacccaaagtgataaggttttgggaactccaaatgctcctccatgtaaagcttggattatgaccaatatttgcatccgagatatc 31402563  T
Q  221 ccgtctaggga 231  Q
    || ||||||||    
T  31402562 ccttctaggga 31402552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 21731033 - 21731170
Alignment:
Q  95 ccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatta 194  Q
    |||||||||||||||||| || |||| ||| ||||||||||| ||||| || || | | ||||||||||||| |||||||||||| | |||| |||||||    
T  21731033 ccatacatttatttttgaaccgtctctaattttccatctatggcccaaggtaagaagagattgagtactccaaagactcctccatatgtagcttggatta 21731132  T
Q  195 tgaccaatcggtgcatccaagaaatcccgtctagggaa 232  Q
    |||||||  |||||||||||||| ||||| | ||||||    
T  21731133 tgaccaagaggtgcatccaagaagtcccgacgagggaa 21731170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 16862125 - 16861976
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    |||||| | ||| |||||||| ||||| ||||  ||||| ||||||||||  ||||| || || ||  ||||  ||||||| |||||||||||||| |||    
T  16862125 aggcattggccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgattggttactccaaagactcctccatgtgtag 16862026  T
Q  186 catggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata 235  Q
    | ||||||||||||||  ||||| |||||||||||||||| |||||||||    
T  16862025 cttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaata 16861976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 10160191 - 10160261
Alignment:
Q  126 ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatg 196  Q
    ||||||||||||||||| || || ||| |||| |||||||||||||||||||||||||| | |||||||||    
T  10160191 ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg 10160261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 871 - 1020
Alignment:
Q  86 aggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag 185  Q
    |||||| | ||| |||||||| ||||| ||||  ||||| ||||||||||  ||||| || || ||  ||||  ||||||| ||||||||||||||||||    
T  871 aggcattgaccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgattggatactccaaagactcctccatgtatag 970  T
Q  186 catggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata 235  Q
    | ||||||||||||||  ||||| |||||||||||||||| |||||||||    
T  971 cttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaata 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 54422625 - 54422752
Alignment:
Q  105 atttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcg 204  Q
    |||||||||||||| || || ||||||||||| ||||| || |||| | |||| | ||||||||||||||| || || |||| |||||| |||||||       
T  54422625 atttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggcactccatagactccttcaagtgtagcttggattgtgaccaagac 54422724  T
Q  205 gtgcatccaagaaatcccgtctagggaa 232  Q
    |||| |||||||||||||| || |||||    
T  54422725 gtgcttccaagaaatcccgcctcgggaa 54422752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 32498399 - 32498317
Alignment:
Q  117 tctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgacc 199  Q
    |||||||| ||||| ||||| ||||| || || ||| |||||||||||||||||||||||||||| || | ||||||||||||    
T  32498399 tctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatgtgtaacttggattatgacc 32498317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 29016980 - 29016903
Alignment:
Q  155 ttgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa 232  Q
    ||||| ||||||||  |||||||| ||||||| |||||| ||||||||  | | |||||||||||||| |||||||||    
T  29016980 ttgagaactccatatgctcctccaagtatagcttggattgtgaccaatacgggaatccaagaaatcccttctagggaa 29016903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 43732766 - 43732685
Alignment:
Q  120 ccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaa 201  Q
    ||||| |||||||||||||||||||| |  || | ||| | |||||| ||||| ||||| || |||| ||||||||||||||    
T  43732766 ccaatcttccatctatgacccaaagtaactaagtgttgggcactccaaagacttctccaagtgtagcttggattatgaccaa 43732685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 9181967 - 9182037
Alignment:
Q  126 ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatg 196  Q
    ||||||||||||||||| || || ||| |||| |||||||||||||||||||||||||| | |||||||||    
T  9181967 ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg 9182037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 11626306 - 11626236
Alignment:
Q  126 ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatg 196  Q
    ||||||||||||||||| || || ||| |||| |||||||||||||||||||||||||| | |||||||||    
T  11626306 ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg 11626236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 29929639 - 29929738
Alignment:
Q  126 ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtc 225  Q
    |||||||||||||||||||| ||||| | ||   ||||||| |||||||| || || | || ||||||||||||||  ||  | ||||||||||||||||    
T  29929639 ttccatctatgacccaaagtaagcaagtgttagatactccaaagactcctgcaagtgttgcttggattatgaccaagagggtcgtccaagaaatcccgtc 29929738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 189602 - 189684
Alignment:
Q  114 ccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatg 196  Q
    ||||| |||||  |||||||||| ||||| ||||| ||| ||||||||||| | ||||||||||||||| | | |||||||||    
T  189602 ccatcaccaatcatccatctatgtcccaaggtgagtaaagattgagtactcaaaagactcctccatgtaaaacttggattatg 189684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 237888 - 238036
Alignment:
Q  87 ggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagc 186  Q
    ||||||| ||| ||||| ||||| || || || ||||| ||||||||||  ||||| || || | | |||||| ||||||||  |||||||| ||  |||    
T  237888 ggcatggaccaaacattgattttcgaaccgtcaccaatcttccatctatagcccaaggttagaagagattgagaactccatatgctcctccaagtgaagc 237987  T
Q  187 atggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata 235  Q
     |||||| || |||||    ||||||||||||||||| | |||||||||    
T  237988 ttggattgtggccaatattggcatccaagaaatcccgacgagggaaata 238036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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