View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_18 (Length: 393)
Name: NF1339_low_18
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 105 - 381
Target Start/End: Original strand, 34787821 - 34788097
Alignment:
| Q |
105 |
gctcaagttgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagt |
204 |
Q |
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| T |
34787821 |
gctcaagttgagatgaagaataagtttattaatcatgctcggaatgtttgggatcgcgcggttactcttttgccgcgggttgatcagttgtggtataagt |
34787920 |
T |
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| Q |
205 |
atattcatatggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatctta |
304 |
Q |
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| T |
34787921 |
atattcatatggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatctta |
34788020 |
T |
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| Q |
305 |
tataaaatttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatccta |
381 |
Q |
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| T |
34788021 |
tataaaatttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatccta |
34788097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 109 - 381
Target Start/End: Complemental strand, 2293372 - 2293100
Alignment:
| Q |
109 |
aagttgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatat |
208 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||| |
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| T |
2293372 |
aagttgagatgaagaataagtttattaaccatgcgaggaatgtttgggatcgcgctgttactcttttgccacgagtggatcagttgtggtataagtatat |
2293273 |
T |
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| Q |
209 |
tcatatggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatata |
308 |
Q |
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| T |
2293272 |
tcatatggaggagatgcttggcaatgttgcgggggcgagacaggtttttgagagatggatgaaatggatgccggatcagcaaggatggctatcttatata |
2293173 |
T |
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| Q |
309 |
aaatttgagcttagatataatgagattgaacgtgcgagagggattttcgagagatttgttttgtgtcatccta |
381 |
Q |
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| T |
2293172 |
aaatttgagctgagatataatgagattgaacgagctagagggattttcgagagatttgtattgtgtcatccta |
2293100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 312
Target Start/End: Complemental strand, 33636022 - 33635822
Alignment:
| Q |
112 |
ttgagatgaagaataagtttattaatcatgctcggaatgtttgggaacgcgcggttactcttttgccgcgggttgatcagttgtggtataagtatattca |
211 |
Q |
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||||||||||||||| || | |||||||| ||||||||| || ||||| |||| |||||| |||||||| |||| ||||||||| |||| || || |
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| T |
33636022 |
ttgagatgaagaatagattcgtcaatcatgcaaggaatgtttacgatcgcgctgttattcttttaccgcgggtccatcaattgtggtatgagtacataca |
33635923 |
T |
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| Q |
212 |
tatggaggagatgcttggcaatgttgcgggggcgaggctggttttcgagagatggatgaagtggatgccggatcagcaaggatggttatcttatataaaa |
311 |
Q |
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||||||| |||| ||||||||||| || || | || |||||||||||| |||||| | |||||||| |||||||| | |||| | ||||| |||||| |
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| T |
33635922 |
tatggagaagattcttggcaatgtcgccggagttagagaggttttcgagaggtggatggaatggatgcctgatcagcatgcatggctctcttacataaaa |
33635823 |
T |
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| Q |
312 |
t |
312 |
Q |
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| T |
33635822 |
t |
33635822 |
T |
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