View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_21 (Length: 376)
Name: NF1339_low_21
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 38 - 367
Target Start/End: Original strand, 41849914 - 41850243
Alignment:
| Q |
38 |
acaaatttgaatgtcttggttattttacatgaagtaagcaatggtataaaatgaagagaaagaaatgaaagagagcgagaccagagcaagtgattgtgaa |
137 |
Q |
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| T |
41849914 |
acaaatttgaatgtcttggttattttacatgaagtaagcaatggtataaaatgaagagaaagaaatgaaatagagtaagaccagagcaagtgattgtaaa |
41850013 |
T |
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| Q |
138 |
gggtaaagcagaagtggtgaaacatggtcgtttggttgagtagttgcgtatggccaaactggttcgtgggagttgaattgaaaggttggccattcttctc |
237 |
Q |
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| T |
41850014 |
gggtaaagcagaagtggtgaaacatggtcgtttggttgagaagttgcgtatggacaaacttgttcgtgggagttgaattgaaaggttggccattcttctt |
41850113 |
T |
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| Q |
238 |
tctgcacttcaatttttggaacattcagaattcagacagaccactccacacacccctgcttgcttatctgcggataaatatgttacctggcatcacccgc |
337 |
Q |
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| T |
41850114 |
tctgcacttcaatttttggaacattcagaattcagacagaccactccacacacccttgcttgcttatctgcggataaatatgttacctggcatcacacgt |
41850213 |
T |
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| Q |
338 |
ggcaacta-gatataatatcttttttatcaa |
367 |
Q |
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||| |||| |||||||||||| ||||||||| |
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| T |
41850214 |
ggc-actatgatataatatctattttatcaa |
41850243 |
T |
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