View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_28 (Length: 330)
Name: NF1339_low_28
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 38899423 - 38899122
Alignment:
| Q |
1 |
gcagcttcagctcctatcagcaaaagatcaactaaacttgtctcttccattaactcttcttgaacttccttccaataagaatctttttccctcgaaacaa |
100 |
Q |
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| T |
38899423 |
gcagcttcagctcctatcagcaaaagatcaactaaacttgtctcttccattaactcttcttgaacttccttccaataagaatctttttccctcgaaacaa |
38899324 |
T |
|
| Q |
101 |
acacattttcgcggcctttttcggtaactccaccacacaattcatactctagagccattgcctgttcatgatttatgatattgaagtcgaggtttgtatg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38899323 |
acacattttcgcggcctttttctgtaactccaccacacaattcatactctagagccattgcctgttcatgatttatgatattgaagtcgaggtttgtatg |
38899224 |
T |
|
| Q |
201 |
ttgctgcagcaatccttgcatggactcttcttgatcgaagatttcgtctaggattgtatttggagatgagagatattgtgattggtcttgatcaaacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38899223 |
ttgctgcagcaatccttgcatggactcttcttgatcgaagatttcgtctaggattgtatttggagatgagagatattgtgattggtcttgatcaaacaat |
38899124 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
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|| |
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| T |
38899123 |
at |
38899122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 38645085 - 38645382
Alignment:
| Q |
5 |
cttcagctcctatcagcaaaagatcaactaaacttgtctcttccattaactcttcttgaacttccttccaataagaatctttttccctcgaaacaaacac |
104 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||| |||| |||||||||||||||||| |
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| T |
38645085 |
cttcagctcccatcagcaaaagatcaactaaacatgtctcttccattagctcttcttgaactgcattccaataagattcttcttccctcgaaacaaacac |
38645184 |
T |
|
| Q |
105 |
attttcgcggcctttttcggtaactccaccacacaattcatactctagagccattgcctgttcatgatttatgatattgaagtcgaggtttgtatgttgc |
204 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645185 |
atttttgcggcctttttcggtaactccaccacacaattcattctctagagccattgcctgttcatgatttatgatattgaagtcgaggtttgtatgttgc |
38645284 |
T |
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| Q |
205 |
tgcagcaatccttgcatggactcttcttgatcgaagatttcgtctaggattgtatttggagatgagagatattgtgattggtcttgatcaaacaatat |
302 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||| |
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| T |
38645285 |
tgcaacaatccttgcatggactcttcttgatcgaagatttcgtctaggattgtatttggatataagtgatattgcgattggtcttgatcaaacaatat |
38645382 |
T |
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