View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1339_low_3 (Length: 631)

Name: NF1339_low_3
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1339_low_3
NF1339_low_3
[»] chr4 (32 HSPs)
chr4 (336-426)||(29223335-29223425)
chr4 (273-337)||(8170924-8170988)
chr4 (273-330)||(3534193-3534250)
chr4 (279-337)||(51234426-51234484)
chr4 (462-515)||(30023482-30023535)
chr4 (273-337)||(48973366-48973430)
chr4 (340-407)||(50384461-50384528)
chr4 (275-337)||(4161846-4161908)
chr4 (334-426)||(51234323-51234415)
chr4 (478-529)||(38324924-38324975)
chr4 (566-620)||(6607399-6607453)
chr4 (272-337)||(29223193-29223259)
chr4 (462-500)||(31846921-31846959)
chr4 (288-337)||(46433544-46433593)
chr4 (489-529)||(6608375-6608415)
chr4 (273-337)||(37197547-37197611)
chr4 (265-316)||(5979404-5979455)
chr4 (462-516)||(30023650-30023703)
chr4 (287-337)||(50384577-50384626)
chr4 (337-426)||(17381378-17381467)
chr4 (287-336)||(40836724-40836773)
chr4 (487-516)||(47762693-47762722)
chr4 (271-336)||(52700955-52701020)
chr4 (272-329)||(55535818-55535875)
chr4 (489-529)||(6607487-6607527)
chr4 (272-316)||(11358526-11358570)
chr4 (460-516)||(11392298-11392354)
chr4 (273-337)||(27395497-27395561)
chr4 (334-390)||(31903405-31903461)
chr4 (460-516)||(41306713-41306769)
chr4 (460-516)||(47404582-47404638)
chr4 (461-497)||(53937889-53937925)
[»] chr3 (32 HSPs)
chr3 (462-529)||(11512386-11512453)
chr3 (462-529)||(22893991-22894058)
chr3 (463-516)||(29081704-29081757)
chr3 (337-402)||(43908789-43908854)
chr3 (334-426)||(12832133-12832225)
chr3 (290-337)||(20936481-20936528)
chr3 (334-422)||(21568455-21568541)
chr3 (273-337)||(14984485-14984549)
chr3 (465-529)||(31342009-31342073)
chr3 (337-428)||(26499909-26499999)
chr3 (340-407)||(39336630-39336697)
chr3 (344-402)||(1324608-1324666)
chr3 (462-500)||(49159508-49159546)
chr3 (462-498)||(48342207-48342243)
chr3 (465-516)||(17547060-17547111)
chr3 (482-529)||(20496568-20496614)
chr3 (282-337)||(29079230-29079285)
chr3 (469-516)||(48342793-48342840)
chr3 (271-337)||(1183180-1183246)
chr3 (273-334)||(23567296-23567355)
chr3 (287-337)||(47199924-47199974)
chr3 (277-338)||(12832235-12832296)
chr3 (462-527)||(17546972-17547037)
chr3 (273-330)||(21568380-21568437)
chr3 (272-337)||(30843617-30843682)
chr3 (566-623)||(31342107-31342164)
chr3 (471-512)||(32385366-32385407)
chr3 (471-504)||(36738378-36738411)
chr3 (284-337)||(39336746-39336799)
chr3 (334-426)||(3941731-3941823)
chr3 (363-407)||(22153800-22153844)
chr3 (481-529)||(36738279-36738327)
[»] chr7 (16 HSPs)
chr7 (463-529)||(7211860-7211926)
chr7 (463-529)||(17272699-17272765)
chr7 (462-529)||(25099341-25099408)
chr7 (337-407)||(30991096-30991166)
chr7 (465-529)||(32315791-32315855)
chr7 (462-525)||(29681764-29681827)
chr7 (465-516)||(32315709-32315760)
chr7 (337-406)||(12849613-12849682)
chr7 (462-495)||(24532828-24532861)
chr7 (337-425)||(3116984-3117071)
chr7 (461-529)||(4911711-4911779)
chr7 (463-521)||(46282868-46282926)
chr7 (307-337)||(49078181-49078211)
chr7 (284-337)||(5198046-5198099)
chr7 (288-337)||(29196851-29196900)
chr7 (336-389)||(49078083-49078136)
[»] chr2 (10 HSPs)
chr2 (271-337)||(12676458-12676524)
chr2 (460-525)||(7755333-7755398)
chr2 (462-529)||(15562203-15562270)
chr2 (337-385)||(13242604-13242652)
chr2 (272-337)||(8940100-8940164)
chr2 (463-500)||(39819054-39819091)
chr2 (487-529)||(39819087-39819129)
chr2 (273-337)||(5709927-5709991)
chr2 (462-498)||(5913515-5913551)
chr2 (273-333)||(19206469-19206529)
[»] chr6 (15 HSPs)
chr6 (273-337)||(33551048-33551112)
chr6 (478-529)||(2980787-2980838)
chr6 (468-525)||(2543839-2543896)
chr6 (469-516)||(16193834-16193881)
chr6 (274-337)||(34937509-34937572)
chr6 (287-337)||(2129037-2129087)
chr6 (273-338)||(10219616-10219681)
chr6 (469-529)||(369511-369571)
chr6 (350-422)||(28747865-28747937)
chr6 (462-512)||(11448056-11448106)
chr6 (272-313)||(515979-516020)
chr6 (469-514)||(28581738-28581783)
chr6 (489-529)||(178660-178700)
chr6 (462-498)||(369437-369473)
chr6 (288-336)||(4964252-4964300)
[»] chr1 (26 HSPs)
chr1 (462-529)||(28045318-28045384)
chr1 (462-525)||(28739409-28739472)
chr1 (272-337)||(39330163-39330228)
chr1 (462-529)||(50754723-50754790)
chr1 (272-426)||(45679598-45679766)
chr1 (162-311)||(12905398-12905544)
chr1 (272-333)||(50155742-50155803)
chr1 (273-337)||(33747348-33747412)
chr1 (487-529)||(9884865-9884907)
chr1 (271-332)||(27900871-27900932)
chr1 (479-516)||(28810065-28810102)
chr1 (350-426)||(19464309-19464385)
chr1 (337-425)||(27900714-27900802)
chr1 (273-337)||(51660500-51660564)
chr1 (469-516)||(10449454-10449501)
chr1 (337-407)||(3048098-3048167)
chr1 (487-529)||(6539651-6539693)
chr1 (287-337)||(33747880-33747930)
chr1 (279-337)||(36145013-36145071)
chr1 (460-498)||(44801884-44801922)
chr1 (491-529)||(49515359-49515397)
chr1 (462-499)||(718981-719018)
chr1 (272-325)||(35684864-35684917)
chr1 (462-498)||(10449579-10449615)
chr1 (305-337)||(34827025-34827057)
chr1 (468-516)||(44938800-44938848)
[»] chr5 (24 HSPs)
chr5 (273-426)||(23159108-23159271)
chr5 (271-337)||(27001193-27001259)
chr5 (273-335)||(29686657-29686719)
chr5 (478-520)||(12605656-12605698)
chr5 (468-525)||(5215666-5215723)
chr5 (462-529)||(9177937-9178004)
chr5 (287-338)||(26675097-26675148)
chr5 (287-338)||(26946705-26946756)
chr5 (461-500)||(29385415-29385454)
chr5 (474-529)||(42772057-42772112)
chr5 (279-337)||(1041846-1041904)
chr5 (287-337)||(3709283-3709333)
chr5 (462-500)||(19417435-19417473)
chr5 (288-334)||(33598302-33598348)
chr5 (277-337)||(37181278-37181338)
chr5 (461-516)||(22097488-22097543)
chr5 (468-529)||(896274-896335)
chr5 (369-422)||(29686524-29686577)
chr5 (370-426)||(16750245-16750301)
chr5 (275-335)||(22579332-22579392)
chr5 (202-265)||(26675315-26675379)
chr5 (202-265)||(26946923-26946987)
chr5 (336-384)||(27001304-27001352)
chr5 (273-337)||(39194879-39194943)
[»] chr8 (14 HSPs)
chr8 (288-337)||(42844926-42844975)
chr8 (337-425)||(42442636-42442724)
chr8 (336-407)||(34949018-34949089)
chr8 (287-337)||(30841094-30841144)
chr8 (273-337)||(7603972-7604036)
chr8 (273-337)||(21600481-21600545)
chr8 (334-424)||(21600556-21600648)
chr8 (273-337)||(44362617-44362681)
chr8 (471-506)||(33763466-33763501)
chr8 (338-425)||(42659993-42660080)
chr8 (336-426)||(2988274-2988364)
chr8 (336-405)||(42845041-42845110)
chr8 (277-337)||(2986962-2987022)
chr8 (273-337)||(42659882-42659946)
[»] scaffold1315 (1 HSPs)
scaffold1315 (468-516)||(1818-1866)
[»] scaffold1293 (1 HSPs)
scaffold1293 (468-516)||(205-253)
[»] scaffold0687 (1 HSPs)
scaffold0687 (273-337)||(1656-1720)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 29223335 - 29223425
Alignment:
Q  336 atacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    |||||||||||||||||||| | || |||||| |||||||||||||||| ||||| || ||||||||||||| |||||| |||||||||||    
T  29223335 atacttatttattatcattttagtccttatatgaaaagagttattgtgaacattgaaagattattttagcgttagagactattttgactaa 29223425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 8170988 - 8170924
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||    
T  8170988 tgattttgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaatattgtcatat 8170924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 3534250 - 3534193
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatatt 330  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  3534250 tgattgtgcaattcgttagtcaaaatagtttcagatgttaaaatatttcattaatatt 3534193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 51234484 - 51234426
Alignment:
Q  279 tgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  51234484 tgcatttcgttagtcaaaatagtctctgatgttaaaatgttttattaatattgtcatat 51234426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 30023482 - 30023535
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcac 515  Q
    ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  30023482 gggtagcacttaggtgatattgtggttggtgacattggtcaaccataatgtcac 30023535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 48973430 - 48973366
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||||| ||| |||||||| ||  ||||||||||||| |||||||||||||||||||    
T  48973430 tgattgtgcaattcattaatcaaaatagttcttgatgttaaaatgcttcattaatattgtcatat 48973366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 407
Target Start/End: Complemental strand, 50384528 - 50384461
Alignment:
Q  340 ttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgt 407  Q
    ||||||||| |||||||| ||  ||||| |||||||||||||||||||||| || |||||||||||||    
T  50384528 ttatttattgtcatttcagtctctatataaaaagagttattgtgagcattgaaagattattttagcgt 50384461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 4161908 - 4161846
Alignment:
Q  275 attgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||| || ||||||||||||| | | |||| ||||||||||||||||||||||||||||    
T  4161908 attgtgcattttgttagtcaaaatagtctatgatattaaaatgtttcattaatattgtcatat 4161846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 51234415 - 51234323
Alignment:
Q  334 atatacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    ||||||||| ||||| |||||||| ||| ||||| ||||||||||||| ||| ||||  | ||||||||||||| |  ||| |||||||||||    
T  51234415 atatacttacttattgtcatttcagtcactatataaaaagagttattgcgagtattgagatattattttagcgtcatggactattttgactaa 51234323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 38324975 - 38324924
Alignment:
Q  478 acattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||||||| ||||| |||||||||| ||||| ||||||||||||    
T  38324975 acattgtggttggtgatattggccaaccataatatcacatgtggctttcttc 38324924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 566 - 620
Target Start/End: Complemental strand, 6607453 - 6607399
Alignment:
Q  566 acacttgtaatattgtggttggttaagttaccaaccacaatgtctcctaagtatt 620  Q
    |||||||||| |||||||||||| | || ||||||||||||||| ||||||||||    
T  6607453 acacttgtaacattgtggttggtaatgtcaccaaccacaatgtcacctaagtatt 6607399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 29223193 - 29223259
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctga-tgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||   || |||||||||||||||    
T  29223193 atgattgtgcaattcgttagtcaaaataatctttgattgttaaaatacctcgttaatattgtcatat 29223259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 500
Target Start/End: Complemental strand, 31846959 - 31846921
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggt 500  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  31846959 gggtagcacttgggtgacattgtggttggtgacattggt 31846921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 46433593 - 46433544
Alignment:
Q  288 ttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||| || ||||| |||||||||||||||||||||| |||||    
T  46433593 ttagtcaaaatagttcctgatattaaaatgtttcattaatattggcatat 46433544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 529
Target Start/End: Original strand, 6608375 - 6608415
Alignment:
Q  489 ggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  6608375 ggtgacattggccaaccataatgtcacacgtggcttccttc 6608415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 37197611 - 37197547
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||| ||| |||||||||||||||| | | | || ||||||||||| ||||||||||||||||    
T  37197611 tgattgggcatttcgttagtcaaaatagtctttaatattaaaatgtttgattaatattgtcatat 37197547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 5979404 - 5979455
Alignment:
Q  265 atagaatatgattgtgcaattcgttagtcaaaataatttctgatgttaaaat 316  Q
    |||| ||||||||||||| |||||||||||||||| | ||||| ||||||||    
T  5979404 atagtatatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 5979455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 462 - 516
Target Start/End: Complemental strand, 30023703 - 30023650
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||||||||| |||| |||||||||||||||||||||  |||||| |||||||||    
T  30023703 gggtagcact-gggtgacattgtggttggtgacattgaccaaccacaatgtcaca 30023650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 50384626 - 50384577
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||||||||| ||| |||||||||||| ||||||| ||||||||||||    
T  50384626 gttagtcaaaatagtttatgatgttaaaatatttcatt-atattgtcatat 50384577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 17381467 - 17381378
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    |||||||||||| |||||| | |   ||||| ||||||||||||||||| |||    |||||||| ||||| |||||| |||||||||||    
T  17381467 tacttatttattgtcattttagtttctatatcaaaagagttattgtgagtattaaggaattatttaagcgttagagactattttgactaa 17381378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 40836724 - 40836773
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcata 336  Q
    ||||||||||||| | | |||| |||||||| ||||||||||||||||||    
T  40836724 gttagtcaaaatagtctgtgatattaaaatgcttcattaatattgtcata 40836773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 516
Target Start/End: Complemental strand, 47762722 - 47762693
Alignment:
Q  487 ttggtgacattggtcaaccataatgtcaca 516  Q
    ||||||||||||||||||||||||||||||    
T  47762722 ttggtgacattggtcaaccataatgtcaca 47762693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 336
Target Start/End: Complemental strand, 52701020 - 52700955
Alignment:
Q  271 tatgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcata 336  Q
    |||| ||||||| ||| ||| |||||||| | | | |||||||||||||| |||||||||||||||    
T  52701020 tatgtttgtgcacttctttaatcaaaatagtctttcatgttaaaatgttttattaatattgtcata 52700955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 55535875 - 55535818
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatat 329  Q
    |||||| |||||||||||||| ||||||||| |  ||| |||||| ||||||||||||    
T  55535875 atgattttgcaattcgttagttaaaataattcccaatgctaaaatatttcattaatat 55535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 6607527 - 6607487
Alignment:
Q  489 ggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  6607527 ggtgacattgaccaaccataatgtcacatgtggctttcttc 6607487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 11358526 - 11358570
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaaaat 316  Q
    ||||||||||| |||||||||||||||| | ||||| ||||||||    
T  11358526 atgattgtgcacttcgttagtcaaaatagtctctgacgttaaaat 11358570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 11392298 - 11392354
Alignment:
Q  460 acgggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||| |||||||||||| |||||||||||| ||| ||||| | |||| |||||||||    
T  11392298 acggatagcacttgggtgacattgtggttgatgaaattggcctaccacaatgtcaca 11392354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 27395497 - 27395561
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||| || ||||||||||||||||||   |||| |||||||||| | |||||||||| ||||    
T  27395497 tgattgttcacttcgttagtcaaaataatccttgatattaaaatgttacgttaatattgttatat 27395561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 31903405 - 31903461
Alignment:
Q  334 atatacttatttattatcatttcaatcattatattaaaagagttattgtgagcattg 390  Q
    ||||||||| ||||| |||||||| ||  ||||| ||||||||||||||||| ||||    
T  31903405 atatacttacttattgtcatttcagtccctatatgaaaagagttattgtgagtattg 31903461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 41306769 - 41306713
Alignment:
Q  460 acgggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    ||||||||||||||    |||||||||||||||| ||||  ||||||||||||||||    
T  41306769 acgggtagcacttgaacgacattgtggttggtgatattgaccaaccataatgtcaca 41306713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 516
Target Start/End: Original strand, 47404582 - 47404638
Alignment:
Q  460 acgggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    ||||||||||||||||| |||| | | | ||||||||||||||| || |||||||||    
T  47404582 acgggtagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcaca 47404638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 53937889 - 53937925
Alignment:
Q  461 cgggtagcacttgggtaacattgtggttggtgacatt 497  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  53937889 cgggtagcacttgagtaacattgtggttagtgacatt 53937925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 462 - 529
Target Start/End: Original strand, 11512386 - 11512453
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  11512386 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttc 11512453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 529
Target Start/End: Complemental strand, 22894058 - 22893991
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||||||| |||||||||||||||||||||  |||||| ||||||||| ||| ||||||||    
T  22894058 gggtagcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttc 22893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 29081757 - 29081704
Alignment:
Q  463 ggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  29081757 ggtagcacttgggtgatattgtggttggtgacattggtcaaccacaatgtcaca 29081704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 43908789 - 43908854
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattatttt 402  Q
    |||||||||||| ||||||||||  |||||| ||||||||||||||||||||||  ||||||||||    
T  43908789 tacttatttattgtcatttcaatacttatatgaaaagagttattgtgagcattgagaaattatttt 43908854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 12832225 - 12832133
Alignment:
Q  334 atatacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    ||||||| | ||||| |||| ||| || |||||| |||||||||||||| || ||||  | |||||||||||||||||||| |||||||||||    
T  12832225 atatactaacttattttcatgtcagtccttatataaaaagagttattgttagtattgagagattattttagcgtaagagactattttgactaa 12832133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 20936528 - 20936481
Alignment:
Q  290 agtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  20936528 agtcaaaatagtttctgatattaaaatgtttcattaatattgtcatat 20936481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 422
Target Start/End: Original strand, 21568455 - 21568541
Alignment:
Q  334 atatacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttga 422  Q
    ||||||||| |||||||||||| | || |||||| |||||||||||||| ||||||  || |||||||||| || |||||| |||||||    
T  21568455 atatacttacttattatcattttagtccttatatgaaaagagttattgtcagcatt--aagattattttagtgtcagagactattttga 21568541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 14984485 - 14984549
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||| |||||||||||||||| || ||||  ||||||| |||| |||||||||||||||    
T  14984485 tgattgtgcacttcgttagtcaaaatagttcctgacattaaaatatttcgttaatattgtcatat 14984549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 529
Target Start/End: Original strand, 31342009 - 31342073
Alignment:
Q  465 tagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||| |||| | |||||||||||||||||||||| |||||| ||||||||| || |||||||||    
T  31342009 tagcatttggatgacattgtggttggtgacattggccaaccacaatgtcacatgtagctttcttc 31342073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 26499909 - 26499999
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaaaa 428  Q
    |||||| |||||||||||||| ||  ||||| ||||||||||| ||||| ||||  ||||||||||||||| |  ||| |||||||||||||    
T  26499909 tacttacttattatcatttcagtccctatat-aaaagagttatggtgagtattgagaaattattttagcgtcaaggactattttgactaaaa 26499999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 407
Target Start/End: Complemental strand, 39336697 - 39336630
Alignment:
Q  340 ttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgt 407  Q
    ||||||||| || |||||||| |||||| ||| |||||||||||| ||||| || |||||||||||||    
T  39336697 ttatttattgtcttttcaatccttatatgaaaggagttattgtgaacattgaaagattattttagcgt 39336630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 402
Target Start/End: Complemental strand, 1324666 - 1324608
Alignment:
Q  344 ttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattatttt 402  Q
    ||||| |||||||| || |||||| ||||||||||||||||| |||| |||||||||||    
T  1324666 ttattgtcatttcagtccttatatgaaaagagttattgtgagtattgaaaaattatttt 1324608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 500
Target Start/End: Complemental strand, 49159546 - 49159508
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggt 500  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  49159546 gggtagcacttgggtgacattgtggttggtgacattggt 49159508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 498
Target Start/End: Original strand, 48342207 - 48342243
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattg 498  Q
    ||||||||||||||| |||||||||||||||||||||    
T  48342207 gggtagcacttgggtgacattgtggttggtgacattg 48342243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 516
Target Start/End: Complemental strand, 17547111 - 17547060
Alignment:
Q  465 tagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||||||||||| |||| |   ||||||||||||||||||||||||||||||    
T  17547111 tagcacttgggtgacatagcatttggtgacattggtcaaccataatgtcaca 17547060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 529
Target Start/End: Complemental strand, 20496614 - 20496568
Alignment:
Q  482 tgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  20496614 tgtggttggtgacattg-tcaaccacaatgtcacacgtgactttcttc 20496568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 29079285 - 29079230
Alignment:
Q  282 aattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||| ||||||||||||| || || || ||||||||||||||||||||||| ||||    
T  29079285 aattagttagtcaaaatagttcctaatattaaaatgtttcattaatattgtgatat 29079230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 516
Target Start/End: Original strand, 48342793 - 48342840
Alignment:
Q  469 acttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||||||| ||||| ||||||| ||||||||||||||| |||||||||    
T  48342793 acttgggtgacattatggttggcgacattggtcaaccacaatgtcaca 48342840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 1183246 - 1183180
Alignment:
Q  271 tatgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||| ||||  |||||||||| | | |||| ||||||| ||||| ||||||||||||||    
T  1183246 tatgattgtgcacttcgacagtcaaaatagtctttgatattaaaatatttcactaatattgtcatat 1183180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 23567355 - 23567296
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtca 334  Q
    ||||||| || |||||||||||||||| |  ||||| |||||||| ||||||||||||||||    
T  23567355 tgattgtacacttcgttagtcaaaatagt--ctgatattaaaatgcttcattaatattgtca 23567296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 47199974 - 47199924
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||||||||| |||| ||| |||||||| |||||||||||| ||||||    
T  47199974 gttagtcaaaatagtttccgatattaaaatgcttcattaatattatcatat 47199924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 12832296 - 12832235
Alignment:
Q  277 tgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatata 338  Q
    |||||| ||||| | |||||||| | ||| || |||||||| ||||||||||||||||||||    
T  12832296 tgtgcacttcgtaaatcaaaatagtctcttatattaaaatgcttcattaatattgtcatata 12832235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 527
Target Start/End: Original strand, 17546972 - 17547037
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttct 527  Q
    ||||||||||||||| ||||     ||||||| ||||| |||||||||||||||| ||||||||||    
T  17546972 gggtagcacttgggtgacataacatttggtgatattggccaaccataatgtcacaagtggctttct 17547037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 21568380 - 21568437
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatatt 330  Q
    |||||||||||||| ||||||||||||     ||||||||||||| ||||||||||||    
T  21568380 tgattgtgcaattcattagtcaaaatagcccatgatgttaaaatgcttcattaatatt 21568437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 30843617 - 30843682
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||| ||||||| ||||||  ||||| |   ||||||||||||| |||||||||||||||||||    
T  30843617 atgattatgcaatttgttagttgaaatagtccatgatgttaaaatgcttcattaatattgtcatat 30843682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 623
Target Start/End: Original strand, 31342107 - 31342164
Alignment:
Q  566 acacttgtaatattgtggttggttaagttaccaaccacaatgtctcctaagtattatc 623  Q
    |||||||||| |||||||||||| | || ||||||||||||||| || || |||||||    
T  31342107 acacttgtaacattgtggttggtaatgtcaccaaccacaatgtcacccaaatattatc 31342164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 512
Target Start/End: Original strand, 32385366 - 32385407
Alignment:
Q  471 ttgggtaacattgtggttggtgacattggtcaaccataatgt 512  Q
    |||||| |||||||| |||||||||||||||||||| |||||    
T  32385366 ttgggtgacattgtgattggtgacattggtcaaccacaatgt 32385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 504
Target Start/End: Complemental strand, 36738411 - 36738378
Alignment:
Q  471 ttgggtaacattgtggttggtgacattggtcaac 504  Q
    |||||| |||||||||||||||||||||||||||    
T  36738411 ttgggtgacattgtggttggtgacattggtcaac 36738378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 39336799 - 39336746
Alignment:
Q  284 ttcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||||||| |||||| |||| |||||||||| |||||| |||||| |||||    
T  39336799 ttcgttagtcagaataatctctgctgttaaaatgcttcatttatattgacatat 39336746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 3941731 - 3941823
Alignment:
Q  334 atatacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    ||||||||| |||||||||| | | || |||||| |||||||||||||||||  |||  | ||||||| |  || |||||| |||||||||||    
T  3941731 atatacttacttattatcatgttagtctttatatgaaaagagttattgtgagtgttgagagattatttcaatgttagagactattttgactaa 3941823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 22153800 - 22153844
Alignment:
Q  363 tatattaaaagagttattgtgagcattggaaaattattttagcgt 407  Q
    ||||| |||||||||||||||||||| | || |||||||||||||    
T  22153800 tatataaaaagagttattgtgagcatcgaaagattattttagcgt 22153844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 529
Target Start/End: Original strand, 36738279 - 36738327
Alignment:
Q  481 ttgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||||| |||||||||||| ||| ||||| ||| ||||||||    
T  36738279 ttgtggttggtgatattggtcaaccacaatatcacaagtgtctttcttc 36738327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 7211860 - 7211926
Alignment:
Q  463 ggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  7211860 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttc 7211926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 17272699 - 17272765
Alignment:
Q  463 ggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  17272699 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttc 17272765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 529
Target Start/End: Complemental strand, 25099408 - 25099341
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||| || | ||||||||||||||| ||||||||||| ||||||||| ||| ||||||||    
T  25099408 gggtagcacttgagtgaaattgtggttggtgactttggtcaaccacaatgtcacaagtgtctttcttc 25099341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 30991096 - 30991166
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgt 407  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||||| |||   | |||||||||||||    
T  30991096 tacttatttattatcatttcaatccttatataaaatgagttattgtgagtattcagatattattttagcgt 30991166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 32315855 - 32315791
Alignment:
Q  465 tagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||| |||||| | ||||||||||||||||||||||||| | ||||||| | ||||||||||||    
T  32315855 tagcagttgggtcaaattgtggttggtgacattggtcaactacaatgtcagaagtggctttcttc 32315791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 462 - 525
Target Start/End: Original strand, 29681764 - 29681827
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggcttt 525  Q
    |||||||| || ||| |||||||||||||||||||||| |||||| || |||||| ||||||||    
T  29681764 gggtagcattttggtgacattgtggttggtgacattggccaaccacaacgtcacatgtggcttt 29681827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 516
Target Start/End: Original strand, 32315709 - 32315760
Alignment:
Q  465 tagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    ||||||||| || |||||||||||||||||||||| |||||| |||||||||    
T  32315709 tagcacttgcgtgacattgtggttggtgacattggccaaccacaatgtcaca 32315760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 12849613 - 12849682
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcg 406  Q
    ||||| |||||| |||||||| ||  ||||| ||||||||||||||||||||||| | ||| ||||||||    
T  12849613 tacttgtttattgtcatttcagtccatatatgaaaagagttattgtgagcattgggagattgttttagcg 12849682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 495
Target Start/End: Complemental strand, 24532861 - 24532828
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgaca 495  Q
    ||||||||||||||||||||||||||||||||||    
T  24532861 gggtagcacttgggtaacattgtggttggtgaca 24532828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 3116984 - 3117071
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgacta 425  Q
    ||||| ||||||||||||| | ||  |||||  |||||||||||||||| |||| || |||| |||||||| |||||| ||||||||||    
T  3116984 tacttgtttattatcatttaagtccctatatgtaaagagttattgtgagtattgaaagatta-tttagcgtcagagactattttgacta 3117071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 529
Target Start/End: Complemental strand, 4911779 - 4911711
Alignment:
Q  461 cgggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||| ||||||||| |||||||| | ||||| |||||||||| ||||||||||| |||  |||||||    
T  4911779 cgggtaacacttgggtgacattgtgatcggtgatattggtcaactataatgtcacaggtgaatttcttc 4911711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 521
Target Start/End: Original strand, 46282868 - 46282926
Alignment:
Q  463 ggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtgg 521  Q
    ||||||||||| || ||||||| |||||||||||||| |||||| ||| ||||| ||||    
T  46282868 ggtagcacttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtgg 46282926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 337
Target Start/End: Complemental strand, 49078211 - 49078181
Alignment:
Q  307 atgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||||||||||||||||||||||    
T  49078211 atgttaaaatgtttcattaatattgtcatat 49078181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 5198099 - 5198046
Alignment:
Q  284 ttcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||||||||| ||| |  |||||||  |||||||||||||||||||    
T  5198099 ttcgttagtcaaaataatctctaacattaaaatacttcattaatattgtcatat 5198046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 29196851 - 29196900
Alignment:
Q  288 ttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||| | | |||||||||||| |||||||||||| |||||||    
T  29196851 ttagtcaaaatagtctttgatgttaaaatatttcattaatatagtcatat 29196900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 49078136 - 49078083
Alignment:
Q  336 atacttatttattatcatttcaatcattatattaaaagagttattgtgagcatt 389  Q
    ||||||| ||||| |||||| | || |||||| |||||||||||||||||||||    
T  49078136 atacttagttattgtcattttagtctttatatgaaaagagttattgtgagcatt 49078083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 12676458 - 12676524
Alignment:
Q  271 tatgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||| || ||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  12676458 tatgattgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgtcatat 12676524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 7755333 - 7755398
Alignment:
Q  460 acgggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggcttt 525  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  7755333 acgggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttt 7755398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 529
Target Start/End: Original strand, 15562203 - 15562270
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||| |||||| |||||||||||| ||||||||| |||||| ||||||||| ||| ||||||||    
T  15562203 gggtagcatttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgactttcttc 15562270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 13242604 - 13242652
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgag 385  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  13242604 tacttatttattgtcatttcagtcattatatgaaaagagttattgtgag 13242652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 8940164 - 8940100
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||  || ||||||||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  8940164 atgattgtgcatatcattagtcaaaataatt-ctgatattaaaatatttaattaatattgtcatat 8940100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 39819054 - 39819091
Alignment:
Q  463 ggtagcacttgggtaacattgtggttggtgacattggt 500  Q
    |||||||||||||| |||||||||||||||||||||||    
T  39819054 ggtagcacttgggtgacattgtggttggtgacattggt 39819091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 529
Target Start/End: Original strand, 39819087 - 39819129
Alignment:
Q  487 ttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||    
T  39819087 ttggtgacattggccaaccacaatgtcacatgtggctttcttc 39819129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 5709991 - 5709927
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||| |||| |||||| || |||||| | ||||||||| |||||||| | ||||||||||||||    
T  5709991 tgattatgcatttcgtttgtgaaaatagtctctgatgttgaaatgtttaaataatattgtcatat 5709927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 498
Target Start/End: Original strand, 5913515 - 5913551
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattg 498  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  5913515 gggtaacacttgggtgacattgtggttggtgacattg 5913551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 19206529 - 19206469
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtc 333  Q
    ||||| |||| || ||||||||||||| | ||||||||||| |||| | ||||||||||||    
T  19206529 tgattatgcactttgttagtcaaaatattctctgatgttaagatgtattattaatattgtc 19206469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 33551112 - 33551048
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  33551112 tgattgtgcatttcgttagtcaaaataatttctgatgttgaaatgtttctttaatattatcatat 33551048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 2980838 - 2980787
Alignment:
Q  478 acattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  2980838 acattgtggttggtgaaattggtcaaccataatgtcacaagtggctttcttc 2980787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 525
Target Start/End: Complemental strand, 2543896 - 2543839
Alignment:
Q  468 cacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggcttt 525  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  2543896 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttt 2543839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 469 - 516
Target Start/End: Complemental strand, 16193881 - 16193834
Alignment:
Q  469 acttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  16193881 acttgggtgacattgtggttggtgacattggtcaaccacaatgtcaca 16193834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 34937509 - 34937572
Alignment:
Q  274 gattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||||| |  ||||||||||||||| ||| | |||||||||||||||||||||| ||||||    
T  34937509 gattgtgcactaagttagtcaaaataatatcttacgttaaaatgtttcattaatattttcatat 34937572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 2129037 - 2129087
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||||||    
T  2129037 gttagtcaaaataatatatgatgttaaaatatttcgttaatattgtcatat 2129087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 10219616 - 10219681
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatata 338  Q
    |||||||||| || ||||||||||||| | ||||| ||||||||  ||| ||||||||||||||||    
T  10219616 tgattgtgcactttgttagtcaaaatagtctctgacgttaaaataattcgttaatattgtcatata 10219681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 529
Target Start/End: Complemental strand, 369571 - 369511
Alignment:
Q  469 acttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||| || |||||||||||||||||||||  |||||| ||||||||| ||| ||||||||    
T  369571 acttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttc 369511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 28747937 - 28747865
Alignment:
Q  350 tcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttga 422  Q
    |||||||| ||  ||||| ||||||||||||||||| |||| ||||||||||| |||| ||| || |||||||    
T  28747937 tcatttcagtccctatataaaaagagttattgtgagtattgaaaaattatttttgcgtcagaaactattttga 28747865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 462 - 512
Target Start/End: Original strand, 11448056 - 11448106
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgt 512  Q
    ||||||||||||||| |||||||||||||| | ||||| |||||| |||||    
T  11448056 gggtagcacttgggtgacattgtggttggtaatattggccaaccacaatgt 11448106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 516020 - 515979
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaa 313  Q
    ||||||||||| |||||||||||||||| | |||||||||||    
T  516020 atgattgtgcacttcgttagtcaaaatagtctctgatgttaa 515979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 28581738 - 28581783
Alignment:
Q  469 acttgggtaacattgtggttggtgacattggtcaaccataatgtca 514  Q
    |||||| | |||||||||||||||||||||| |||||| |||||||    
T  28581738 acttggctgacattgtggttggtgacattggccaaccacaatgtca 28581783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 529
Target Start/End: Original strand, 178660 - 178700
Alignment:
Q  489 ggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||| ||||||| ||||||||| ||||||||||||    
T  178660 ggtgacattgatcaaccacaatgtcacatgtggctttcttc 178700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 498
Target Start/End: Original strand, 369437 - 369473
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattg 498  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  369437 gggtagcacttgggtgacattgtggttgatgacattg 369473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 4964300 - 4964252
Alignment:
Q  288 ttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcata 336  Q
    |||||||||||| ||| |||| |||||||| |||||||||||| |||||    
T  4964300 ttagtcaaaatagtttttgatattaaaatgcttcattaatattatcata 4964252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 529
Target Start/End: Original strand, 28045318 - 28045384
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  28045318 gggtagcacttgggtgacattgtggttggtga-attggccaaccataatgtcacaagtggctttcttc 28045384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 525
Target Start/End: Complemental strand, 28739472 - 28739409
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggcttt 525  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  28739472 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttt 28739409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 39330228 - 39330163
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||||||||||||||||| |||||| | |||| ||||||| ||||||||||||||||||||||    
T  39330228 atgattgtgcaattcgttagttaaaatagtctctgttgttaaactgtttcattaatattgtcatat 39330163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 529
Target Start/End: Original strand, 50754723 - 50754790
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||| |||| ||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  50754723 gggtagtactttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttc 50754790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 426
Target Start/End: Complemental strand, 45679766 - 45679598
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcata--------------tacttatttattatcatttca 357  Q
    |||||||||||||||||||||||||||| |  || |||||||||| ||| ||||| ||||| |||              |||||| ||||| |||||| |    
T  45679766 atgattgtgcaattcgttagtcaaaatagtccctaatgttaaaatattttattaaaattgttatattcatccttataagtacttacttattgtcatttta 45679667  T
Q  358 atcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
     || |||||| ||||||||||||||||| ||||  | ||||||| ||||| ||||||||||||||||||    
T  45679666 gtccttatatgaaaagagttattgtgagtattgagatattatttcagcgtcagagaccattttgactaa 45679598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 12905398 - 12905544
Alignment:
Q  162 atattcatgtatatgaactgcactctttttcatgaatttaagggtaatagtcactttggtcgtgaatgtctaatgagtaatcacactagtcctttaatat 261  Q
    ||||||||||||||  ||||||||||||||| |||||||||| ||| || | ||||||||| ||||||| |  ||| || ||| | ||||||||||||||    
T  12905398 atattcatgtatat--actgcactctttttcgtgaatttaagagtagtaattactttggtcttgaatgtattgtgactagtca-aatagtcctttaatat 12905494  T
Q  262 atcatagaatatgattgtgcaattcgttagtcaaaataatttctgatgtt 311  Q
    ||  |||  | |||||||  | || ||||||||||||||| | |||||||    
T  12905495 attttagtctttgattgtatactttgttagtcaaaataatatttgatgtt 12905544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 50155803 - 50155742
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtc 333  Q
    |||||||| |||||| |||||||||||| |  ||||| ||||||||||||||||||||||||    
T  50155803 atgattgtacaattcattagtcaaaatagtcactgatattaaaatgtttcattaatattgtc 50155742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 33747348 - 33747412
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||| |||| |||||||||||||||| | |||||| |||||||| | |||||||||||||||||    
T  33747348 tgattctgcacttcgttagtcaaaatagtctctgatattaaaatgctccattaatattgtcatat 33747412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 529
Target Start/End: Original strand, 9884865 - 9884907
Alignment:
Q  487 ttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  9884865 ttggtgacattggtcaaccacaatgtcacatgtggctttcttc 9884907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 27900932 - 27900871
Alignment:
Q  271 tatgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgt 332  Q
    ||||||||||||||| ||||||| ||||| |   ||| ||||||||||||||||||||||||    
T  27900932 tatgattgtgcaattagttagtcgaaatagtccatgacgttaaaatgtttcattaatattgt 27900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 516
Target Start/End: Complemental strand, 28810102 - 28810065
Alignment:
Q  479 cattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||||||||||||||||||||||||||| |||||||||    
T  28810102 cattgtggttggtgacattggtcaaccacaatgtcaca 28810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 19464385 - 19464309
Alignment:
Q  350 tcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    |||||||| ||  ||||| ||||||||||| ||||||||||  | |||||||||| || |||||| |||||||||||    
T  19464385 tcatttcagtccctatatgaaaagagttatcgtgagcattgagatattattttagtgtcagagactattttgactaa 19464309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 425
Target Start/End: Complemental strand, 27900802 - 27900714
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgacta 425  Q
    |||||| ||||| |||||| | ||  ||||||||||||||| |||| |||||||  | ||||||||||||| | |||| ||||||||||    
T  27900802 tacttacttattgtcattttagtccatatattaaaagagttcttgtaagcattgagagattattttagcgtcaaagactattttgacta 27900714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 51660500 - 51660564
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||| |||| ||||||||||||| ||   ||||||||||||||| ||||||||| ||||||    
T  51660500 tgattgtgaaatttgttagtcaaaatagttcacgatgttaaaatgttttattaatattatcatat 51660564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 516
Target Start/End: Original strand, 10449454 - 10449501
Alignment:
Q  469 acttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||||||| |||||||||||||||||||||  |||||| |||||||||    
T  10449454 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcaca 10449501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 3048098 - 3048167
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgt 407  Q
    |||||| ||||| |||| || ||| |||||| ||||| ||||| |||||||||| ||||||||||||||||    
T  3048098 tacttacttattgtcatatcgatctttatatgaaaagtgttat-gtgagcattgaaaaattattttagcgt 3048167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 6539693 - 6539651
Alignment:
Q  487 ttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||    
T  6539693 ttggtgacattggtcaaccacaatgtcacatgtgactttcttc 6539651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 33747930 - 33747880
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||| |||||||| ||| ||| ||| |||||||||||||||||||||||||    
T  33747930 gttaatcaaaatagtttttgaggttgaaatgtttcattaatattgtcatat 33747880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 36145071 - 36145013
Alignment:
Q  279 tgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||| ||||||||||||| |   |||||||||||| ||| ||||||||||||||||    
T  36145071 tgcaatttgttagtcaaaatagtccatgatgttaaaatcttttattaatattgtcatat 36145013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 498
Target Start/End: Complemental strand, 44801922 - 44801884
Alignment:
Q  460 acgggtagcacttgggtaacattgtggttggtgacattg 498  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  44801922 acgggtagcacttggatgacattgtggttggtgacattg 44801884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 529
Target Start/End: Complemental strand, 49515397 - 49515359
Alignment:
Q  491 tgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  49515397 tgacattggtcaaccataatgtcataagtggctttcttc 49515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 718981 - 719018
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattgg 499  Q
    |||||||||||| || ||||||||||||||||||||||    
T  718981 gggtagcacttgagtgacattgtggttggtgacattgg 719018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 35684917 - 35684864
Alignment:
Q  272 atgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcatta 325  Q
    ||||||||||| |||||||||||||||| |   | |||||||||||||||||||    
T  35684917 atgattgtgcagttcgttagtcaaaatagtcattaatgttaaaatgtttcatta 35684864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 10449615 - 10449579
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattg 498  Q
    ||||||||||||| | |||||||||||||||||||||    
T  10449615 gggtagcacttggatgacattgtggttggtgacattg 10449579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 34827057 - 34827025
Alignment:
Q  305 tgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||||||||||||| |||||||||||||||    
T  34827057 tgatgttaaaatgtttcgttaatattgtcatat 34827025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 44938800 - 44938848
Alignment:
Q  468 cacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    ||||||||| ||||||||||| |||||||||  |||||| |||||||||    
T  44938800 cacttgggtgacattgtggttagtgacattgaccaaccagaatgtcaca 44938848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 273 - 426
Target Start/End: Original strand, 23159108 - 23159271
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat----------acttatttattatcatttcaatcat 362  Q
    |||||||||| ||||||||| |||||| |  |||||||| ||||||||||||||||||  |||||          | ||| ||||| |||||||| ||      
T  23159108 tgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgtttcattaatattaacatatttgtccttcaatttacttattgtcatttcagtctc 23159207  T
Q  363 tatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    ||| | |||||||||||||||||||||| |||||||||||||||| | |||| ||||| |||||    
T  23159208 tatgtgaaaagagttattgtgagcattgaaaaattattttagcgtcaaagactattttaactaa 23159271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 27001193 - 27001259
Alignment:
Q  271 tatgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    ||||||||||||||| ||||||||||||| | | ||||||||||||  |||||||||||||||||||    
T  27001193 tatgattgtgcaatttgttagtcaaaatagtctttgatgttaaaatacttcattaatattgtcatat 27001259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 29686719 - 29686657
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcat 335  Q
    |||||||| | ||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  29686719 tgattgtgtagttcgttagtcaaaataatcccagatgttaaaatgtttcattaatattgtcat 29686657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 12605698 - 12605656
Alignment:
Q  478 acattgtggttggtgacattggtcaaccataatgtcacacgtg 520  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  12605698 acattgtggttggtgacattggtcaaccacaatgtcacacgtg 12605656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 525
Target Start/End: Complemental strand, 5215723 - 5215666
Alignment:
Q  468 cacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggcttt 525  Q
    ||||||||| |||||||||||| |||||||||||||||| ||| ||||| ||||||||    
T  5215723 cacttgggtgacattgtggttgatgacattggtcaaccacaatatcacatgtggcttt 5215666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 462 - 529
Target Start/End: Complemental strand, 9178004 - 9177937
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||||||| | |||||||||||||||| ||||| |||||| ||| ||||| ||| ||||||||    
T  9178004 gggtagcacttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgactttcttc 9177937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 26675097 - 26675148
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatata 338  Q
    ||||||||||||||||  | |||||||||| |||||||||||||||||||||    
T  26675097 gttagtcaaaataattcataatgttaaaatatttcattaatattgtcatata 26675148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 26946705 - 26946756
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatata 338  Q
    ||||||||||||||||  | |||||||||| |||||||||||||||||||||    
T  26946705 gttagtcaaaataattcataatgttaaaatatttcattaatattgtcatata 26946756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 461 - 500
Target Start/End: Complemental strand, 29385454 - 29385415
Alignment:
Q  461 cgggtagcacttgggtaacattgtggttggtgacattggt 500  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29385454 cgggtagcacttgggtgacattgtggttggtgacattggt 29385415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 42772112 - 42772057
Alignment:
Q  474 ggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    |||||||||||||||||||||||||  |||||| ||||||||| ||| ||||||||    
T  42772112 ggtaacattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttc 42772057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 1041846 - 1041904
Alignment:
Q  279 tgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||| |||||| ||||||||| || || |||||||||||||||||||| ||||||||||    
T  1041846 tgcacttcgtttgtcaaaatagttactaatgttaaaatgtttcattaacattgtcatat 1041904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 3709283 - 3709333
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||||||| |  |||||||||||||||||||||||||| ||||    
T  3709283 gttagtcaaaataattccccatgttaaaatgtttcattaatattgtaatat 3709333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 19417435 - 19417473
Alignment:
Q  462 gggtagcacttgggtaacattgtggttggtgacattggt 500  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  19417435 gggtagcacttgggtgacattgtggttggtgacattggt 19417473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 33598348 - 33598302
Alignment:
Q  288 ttagtcaaaataatttctgatgttaaaatgtttcattaatattgtca 334  Q
    |||||||||||||||||| || |||||||||||| ||||||||||||    
T  33598348 ttagtcaaaataatttcttatattaaaatgtttctttaatattgtca 33598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 337
Target Start/End: Complemental strand, 37181338 - 37181278
Alignment:
Q  277 tgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||| |||||| ||||||||||| |||   ||||||||||||| |||||||||||||||    
T  37181338 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatat 37181278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 516
Target Start/End: Complemental strand, 22097543 - 22097488
Alignment:
Q  461 cgggtagcacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    |||||||||||||  | ||||||| ||||||||||||||||||| | |||||||||    
T  22097543 cgggtagcacttgaatgacattgtagttggtgacattggtcaactacaatgtcaca 22097488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 529
Target Start/End: Original strand, 896274 - 896335
Alignment:
Q  468 cacttgggtaacattgtggttggtgacattggtcaaccataatgtcacacgtggctttcttc 529  Q
    ||||||||| | |||||||||||||| |||| ||||||| ||||||||| | || |||||||    
T  896274 cacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcggttttcttc 896335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 29686577 - 29686524
Alignment:
Q  369 aaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttga 422  Q
    |||| |||||||||| |||||| || ||||||||||||| |||||| |||||||    
T  29686577 aaaaaagttattgtgcgcattgaaatattattttagcgtcagagactattttga 29686524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 16750245 - 16750301
Alignment:
Q  370 aaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    |||||||||||||||| |||| ||||||||||||  || |||||| ||| |||||||    
T  16750245 aaagagttattgtgagtattgaaaaattattttaatgtcagagacgattgtgactaa 16750301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 22579332 - 22579392
Alignment:
Q  275 attgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcat 335  Q
    |||||||| |||||||||| ||||| | ||| |||||| ||| |||| |||||||||||||    
T  22579332 attgtgcacttcgttagtcgaaatagtctctaatgttagaatatttcgttaatattgtcat 22579392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 26675379 - 26675315
Alignment:
Q  202 agggtaatagtcactttgg-tcgtgaatgtctaatgagtaatcacactagtcctttaatatatca 265  Q
    ||||||||||||||||||| || ||||||| |||||| |||||||| || || |||||| |||||    
T  26675379 agggtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatca 26675315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 26946987 - 26946923
Alignment:
Q  202 agggtaatagtcactttgg-tcgtgaatgtctaatgagtaatcacactagtcctttaatatatca 265  Q
    ||||||||||||||||||| || ||||||| |||||| |||||||| || || |||||| |||||    
T  26946987 agggtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatca 26946923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 27001304 - 27001352
Alignment:
Q  336 atacttatttattatcatttcaatcattatattaaaagagttattgtga 384  Q
    ||||||| ||||| |||||| |||| |||||| ||||||||||||||||    
T  27001304 atacttaattattgtcattttaatccttatatgaaaagagttattgtga 27001352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 39194879 - 39194943
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||| || ||||||||||||| |  |||   |||||||||||| |||||||||||||||    
T  39194879 tgattgtgcactttgttagtcaaaatagtcactgccattaaaatgtttcgttaatattgtcatat 39194943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 42844926 - 42844975
Alignment:
Q  288 ttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  42844926 ttagtcaaaatagttcctgatattaaaatgtttcattaatattgtcatat 42844975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 42442636 - 42442724
Alignment:
Q  337 tacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgacta 425  Q
    ||||||||||||  ||||||||||  |||||  |||||||||||| ||| ||||  | |||| ||||||||||||||| ||||||||||    
T  42442636 tacttatttattgacatttcaatctctatatgtaaagagttattgcgagtattgagagattactttagcgtaagagactattttgacta 42442724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 34949089 - 34949018
Alignment:
Q  336 atacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgt 407  Q
    ||||| ||||||| ||| ||||||| |||||| |||||||||||||||| ||||  || |||||||||||||    
T  34949089 atactcatttattgtcaattcaatccttatataaaaagagttattgtgaacattaaaagattattttagcgt 34949018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 30841094 - 30841144
Alignment:
Q  287 gttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||| |||||||||| ||||||||||||||||||| ||||| |||||||||    
T  30841094 gttaatcaaaataatatctgatgttaaaatgtttcgttaatcttgtcatat 30841144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 7603972 - 7604036
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||| |||||| ||||||||| | ||| || || |||||| ||||||||||||||||||    
T  7603972 tgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtcatat 7604036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 21600481 - 21600545
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||| ||||||| | ||| || |  ||||||||||||| ||||||||||||||||||||    
T  21600481 tgattgtgcatttcgttaataaaattagtcactgatgttaaaatatttcattaatattgtcatat 21600545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 21600556 - 21600648
Alignment:
Q  334 atatacttatttattatcatttcaatc-at-tatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgact 424  Q
    ||||||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| |  | ||||||||||| | | |||| |||||||||    
T  21600556 atatacttacttattgtcatttcaatccatatatataaaaagagttattgtgagcatcgagagattattttagcttcatagactattttgact 21600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 44362681 - 44362617
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||| |||||||||||||||||| | | | |||||||||| ||||||||||| || |||||    
T  44362681 tgattgtgtaattcgttagtcaaaatagtctataatgttaaaatatttcattaatactgacatat 44362617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 506
Target Start/End: Original strand, 33763466 - 33763501
Alignment:
Q  471 ttgggtaacattgtggttggtgacattggtcaacca 506  Q
    |||||| |||||||||||||||||||||||||||||    
T  33763466 ttgggtgacattgtggttggtgacattggtcaacca 33763501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 42659993 - 42660080
Alignment:
Q  338 acttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgacta 425  Q
    ||||| ||||| |||||| |||| |||||| |||||| ||||||||||||||| ||  |||||| ||||| | | || ||||||||||    
T  42659993 acttacttattgtcattttaatccttatatgaaaagaattattgtgagcattgaaaggttatttgagcgtcaaatactattttgacta 42660080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 2988274 - 2988364
Alignment:
Q  336 atacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagcgtaagagaccattttgactaa 426  Q
    ||||||| ||||| |||||||| |   ||||| |||||| |||||||||| |||| || ||||||||||||| |  ||| |||||||||||    
T  2988274 atacttagttattttcatttcagttcatatataaaaagaattattgtgagtattgaaatattattttagcgtcaatgactattttgactaa 2988364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 42845041 - 42845110
Alignment:
Q  336 atacttatttattatcatttcaatcattatattaaaagagttattgtgagcattggaaaattattttagc 405  Q
    ||||||||||||| |||||||||||| ||| | ||| ||||||||  ||| |||| || |||||||||||    
T  42845041 atacttatttattgtcatttcaatcactatgtaaaatgagttatttagagtattgaaagattattttagc 42845110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 2986962 - 2987022
Alignment:
Q  277 tgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||| || ||||||||||||| | | | |||||||||||||||||||||| | ||||||    
T  2986962 tgtgcattttgttagtcaaaatagtatttaatgttaaaatgtttcattaatactatcatat 2987022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 42659882 - 42659946
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||||| | ||||||||| |  | | |||| |||||||||||||| |||||||||||||    
T  42659882 tgattgtgcaatccattagtcaaagttgtctttgatattaaaatgtttcatcaatattgtcatat 42659946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 1818 - 1866
Alignment:
Q  468 cacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||| |||||    
T  1818 cacttgggtgacattgtggttggtgacattgatcaaccacaatatcaca 1866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 516
Target Start/End: Complemental strand, 253 - 205
Alignment:
Q  468 cacttgggtaacattgtggttggtgacattggtcaaccataatgtcaca 516  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||| |||||    
T  253 cacttgggtgacattgtggttggtgacattgatcaaccacaatatcaca 205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 1656 - 1720
Alignment:
Q  273 tgattgtgcaattcgttagtcaaaataatttctgatgttaaaatgtttcattaatattgtcatat 337  Q
    |||||||||| |||||| ||||||||| | ||| || || |||||| ||||||||||||||||||    
T  1656 tgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtcatat 1720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University