View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1339_low_30 (Length: 318)

Name: NF1339_low_30
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1339_low_30
NF1339_low_30
[»] chr6 (4 HSPs)
chr6 (45-222)||(16772588-16772765)
chr6 (45-222)||(32708005-32708182)
chr6 (46-222)||(16777924-16778100)
chr6 (52-222)||(32703644-32703805)
[»] scaffold0015 (2 HSPs)
scaffold0015 (46-222)||(29649-29825)
scaffold0015 (45-222)||(24333-24510)
[»] chr1 (5 HSPs)
chr1 (46-222)||(2797127-2797303)
chr1 (46-222)||(42375121-42375297)
chr1 (45-222)||(2790697-2790874)
chr1 (46-217)||(21010524-21010705)
chr1 (104-199)||(394908-395012)
[»] chr8 (5 HSPs)
chr8 (45-222)||(91580-91757)
chr8 (46-222)||(29010904-29011080)
chr8 (46-222)||(86264-86440)
chr8 (46-222)||(19802735-19802911)
chr8 (164-198)||(26491885-26491919)
[»] chr5 (3 HSPs)
chr5 (45-222)||(12842727-12842904)
chr5 (46-222)||(37023049-37023225)
chr5 (52-166)||(24092264-24092379)
[»] chr3 (6 HSPs)
chr3 (44-222)||(13723174-13723352)
chr3 (51-222)||(13719277-13719448)
chr3 (45-222)||(6806706-6806884)
chr3 (71-222)||(26137072-26137223)
chr3 (46-166)||(4099570-4099691)
chr3 (77-212)||(23619202-23619351)
[»] chr7 (5 HSPs)
chr7 (46-222)||(11708868-11709044)
chr7 (45-222)||(11716383-11716560)
chr7 (52-222)||(13160340-13160511)
chr7 (45-218)||(13166800-13166963)
chr7 (164-222)||(37063105-37063163)
[»] chr4 (2 HSPs)
chr4 (45-221)||(14026807-14026985)
chr4 (45-89)||(14023866-14023910)
[»] chr2 (3 HSPs)
chr2 (118-222)||(20925513-20925617)
chr2 (71-166)||(36314767-36314863)
chr2 (71-157)||(37758843-37758931)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 16772765 - 16772588
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  16772765 atgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 16772666  T
Q  145 taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16772665 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 16772588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 32708005 - 32708182
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  32708005 atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 32708104  T
Q  145 taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32708105 caagccaccatgtttgacatttactagattgtgtttccattgatatattaattatcagcactatttcagctaccatat 32708182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 16778100 - 16777924
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  16778100 tgatacagagtaaaactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 16778001  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16778000 aagccaccatatttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 16777924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 32703644 - 32703805
Alignment:
Q  52 agagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaataagcca 151  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||         |||    
T  32703644 agagtaagacactaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaacaag---------cca 32703734  T
Q  152 ccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32703735 ccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcattatttcagctaccatat 32703805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 29825 - 29649
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  29825 tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 29726  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29725 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 29649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 24510 - 24333
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  24510 atgatacagagtaagactttaatatcgcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 24411  T
Q  145 taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24410 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 24333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 2797303 - 2797127
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  2797303 tgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaat 2797204  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797203 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 2797127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 42375121 - 42375297
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  42375121 tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 42375220  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42375221 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcaacactatttcagctaccatat 42375297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 2790874 - 2790697
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    ||||| || |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  2790874 atgatacaaagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaatttcaccaccctactattgacaataaggccaa 2790775  T
Q  145 taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2790774 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 2790697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 21010705 - 21010524
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    |||| ||||| ||||| || |||||||||| ||||||||| ||||||||||  ||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  21010705 tgatacagagaaagacattcatatggcatagactttgcagtcaccaccctaccatgctagctttccaatttcaccaccctactattgacaataaggccaa 21010606  T
Q  145 taagccaccatgtttgaca---------tttactagattgtgtttccattgatgtattaattatcagcactatttcagctac 217  Q
     ||||||||||||||||||         ||||||||||||||||||||||||||| |||||||| |  ||||||||| ||||    
T  21010605 caagccaccatgtttgacaatatctatttttactagattgtgtttccattgatgtgttaattattattactatttcaactac 21010524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 395012 - 394908
Alignment:
Q  104 gctttccaattccaccaccctactattcacaataaggccaataagccaccatgtttgaca---------tttactagattgtgtttccattgatgtatta 194  Q
    ||||||| |||||| ||| |||||||| ||  |||| | ||||||||| |||||||||||         |||||||||||||||||||||||||||||||    
T  395012 gctttcccattccatcactctactattgactttaagccaaataagccatcatgtttgacaatatctatttttactagattgtgtttccattgatgtatta 394913  T
Q  195 attat 199  Q
    |||||    
T  394912 attat 394908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 91580 - 91757
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  91580 atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 91679  T
Q  145 taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  91680 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 91757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 29011080 - 29010904
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||     
T  29011080 tgatacagagtaagactttaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactatcgacaataaggccaac 29010981  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29010980 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 29010904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 86264 - 86440
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  86264 tgatacagagtaagacattaatatggcatagactttgcagctaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 86363  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86364 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 86440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 19802735 - 19802911
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| ||||||||||| ||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  19802735 tgatacagagtaagacattaatatggcatagagttttcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 19802834  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19802835 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 19802911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 26491919 - 26491885
Alignment:
Q  164 tttactagattgtgtttccattgatgtattaatta 198  Q
    |||||||||||||||||| ||||||||||||||||    
T  26491919 tttactagattgtgtttcaattgatgtattaatta 26491885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 12842727 - 12842904
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  12842727 atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaa 12842826  T
Q  145 taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12842827 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 12842904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 37023225 - 37023049
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||     
T  37023225 tgatacagagtaagactttaatatggcatagattttgcagccaccaccctatatgctagctttccaattccaccaccctactattgacaataaggccaac 37023126  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37023125 aagccaccatatttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcaactaccatat 37023049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 24092379 - 24092264
Alignment:
Q  52 agagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagcc 150  Q
    |||| ||||| ||| ||||||||| ||||||||||||||||||||  ||| ||||||||| | | ||||||||||||||| ||||||||||||| |||||    
T  24092379 agagcaagacattactatggcatagactttgcagccaccaccctaccatgctagctttcctagttcaccaccctactattgacaataaggccaacaagcc 24092280  T
Q  151 accatgtttgacattt 166  Q
    ||||||||||||||||    
T  24092279 accatgtttgacattt 24092264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 13723352 - 13723174
Alignment:
Q  44 tatgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggcca 143  Q
    |||||| || |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13723352 tatgatacacagtaagacattaatatgacatagactttgcagccaccaccctatatgttagctttccaattccaccaccctactatttacaataaggcca 13723253  T
Q  144 ataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13723252 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 13723174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 13719448 - 13719277
Alignment:
Q  51 cagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaataagcc 150  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  13719448 cagagtaagacattaatatggcatagactttgcagccaccaccctatatgctagctttccaattccaccaccttactattgacaataaggccaacaagcc 13719349  T
Q  151 accatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13719348 accatgtttgacatttactagattgtgtttccattgatgtattaattatcaacactatttcagctaccatat 13719277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 6806884 - 6806706
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccc-tatatgttagctttccaattccaccaccctactattcacaataaggcca 143  Q
    ||||| ||||||||||| |||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  6806884 atgatacagagtaagacattaatatgacatagactttgcagccaccacccctatatgctagctttccaattccaccaccctactattgacaataaggcca 6806785  T
Q  144 ataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6806784 acaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattaacagcactatttcagctaccatat 6806706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 26137223 - 26137072
Alignment:
Q  71 gcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagccaccatgtttgacatttact 169  Q
    ||||| ||||||||||||||||||||| ||| ||||   || ||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||    
T  26137223 gcatagactttgcagccaccaccctatcatgctagcac-cctattccaccaccctactattgacaataaggccaacaagtcaccatatttgacatttact 26137125  T
Q  170 agattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26137124 agattgtgtttccattgatgtattaattattagtactatttcagctaccatat 26137072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 4099570 - 4099691
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    |||| ||||| ||||| ||| ||||||||| |||||| |||||||||||||  ||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  4099570 tgatacagagcaagacattactatggcatagactttgtagccaccaccctaccatgctagctttcctattccaccaccctactattgacaataaggccaa 4099669  T
Q  145 taagccaccatgtttgacattt 166  Q
     |||||||||| ||||||||||    
T  4099670 caagccaccatttttgacattt 4099691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 23619202 - 23619351
Alignment:
Q  77 actttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagccaccatgtttgacatt---------- 165  Q
    ||||||| ||||||||||||  ||| ||| ||||| ||||||||| ||||||||| ||  |||||| || |||||| |||||||||||||              
T  23619202 actttgcggccaccaccctaccatgctagttttcccattccaccatcctactattgactttaaggcaaacaagccatcatgtttgacattatattttttt 23619301  T
Q  166 ---tactagattgtgtttccattgatgtattaattatcagcactatttca 212  Q
       ||||||||||||||||||||||||||||| ||| ||  |||||||||    
T  23619302 ttttactagattgtgtttccattgatgtattagttaccattactatttca 23619351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 11708868 - 11709044
Alignment:
Q  46 tgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaat 145  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||     
T  11708868 tgatacagagtaagacattaatatagcatagactttgcagccaccaccctatatgctagctttccaattccacaaccctattattgacaataaggccaac 11708967  T
Q  146 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11708968 aagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 11709044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 11716383 - 11716560
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattcacaataaggccaa 144  Q
    ||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||| |||||| |||| |||||||||||||    
T  11716383 atgatacagagtaagacattaatatgacatagactttgcagccaccaccctatatgctagcttttcaattccacaaccctattattgacaataaggccaa 11716482  T
Q  145 taagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11716483 caagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 11716560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 13160340 - 13160511
Alignment:
Q  52 agagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggccaataagcc 150  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  13160340 agagcaagacattaatatggcatagactttgcagccaccaccctaccatgctagctttccaattccaccaccctactattgaaaataaggccaacaagcc 13160439  T
Q  151 accatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13160440 tccatgtttgacatttactagattgtgtttccattgatgtattaattattagtactatttcagctaccatat 13160511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 13166800 - 13166963
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctat-atgttagctttccaattccaccaccctactattcacaataaggcca 143  Q
    ||||| ||||| ||||| ||||||||||||| | |||||||||||||| |||  ||| || |||||||||||||||||||||||||| ||||||||||||    
T  13166800 atgatacagagcaagacattaatatggcatagaatttgcagccaccacgctaccatgctacctttccaattccaccaccctactattgacaataaggcca 13166899  T
Q  144 ataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctacc 218  Q
    | |           |||||||||||||||||||||||||||| ||||||||||||| |  |||||||||||||||    
T  13166900 aca-----------ttgacatttactagattgtgtttccatttatgtattaattattaatactatttcagctacc 13166963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 37063105 - 37063163
Alignment:
Q  164 tttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccatat 222  Q
    |||||| |||||||||| |||||||||||||||||| |  ||||||||| |||| ||||    
T  37063105 tttactggattgtgttttcattgatgtattaattattattactatttcaactacaatat 37063163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 14026807 - 14026985
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccaccaccctatatgttagctttccaattccaccaccc--tactattcacaataaggcc 142  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||  ||||||| |||||||||||    
T  14026807 atgatacagagtaagacattaatatggcatagactttgcagccaccaccctatatgctaactttccaattccaccaccccctactattgacaataaggcc 14026906  T
Q  143 aataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccata 221  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14026907 aacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctaccata 14026985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 14023866 - 14023910
Alignment:
Q  45 atgatgcagagtaagactttaatatggcataaactttgcagccac 89  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||    
T  14023866 atgatacagagtaagacattaatatggcatagactttgcagccac 14023910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 20925617 - 20925513
Alignment:
Q  118 ccaccctactattcacaataaggccaataagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctac 217  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20925617 ccaccctactattgacaataaggccaacaagccaccatgtttgacatttactagattgtgtttccattgatgtattaattatcagcactatttcagctac 20925518  T
Q  218 catat 222  Q
    |||||    
T  20925517 catat 20925513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 36314863 - 36314767
Alignment:
Q  71 gcataaactttgcagccaccaccctatatgttagctttccaattccaccaccctactattca-caataaggccaataagccaccatgtttgacattt 166  Q
    |||||||||||||||||||||||    ||| ||||||||| |||||||||||||| |||| | |||||||||||| || ||||||||||||||||||    
T  36314863 gcataaactttgcagccaccacctaccatgctagctttcctattccaccaccctaatattgaacaataaggccaacaaaccaccatgtttgacattt 36314767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 37758843 - 37758931
Alignment:
Q  71 gcataaactttgcagccaccaccctat-atgttagctttccaattccacca-ccctactattcacaataaggccaataagccaccatgt 157  Q
    ||||| ||||||||||||||| ||||| ||| ||||||||  ||||||||| |||||||||| ||  ||| ||||| ||||||||||||    
T  37758843 gcatagactttgcagccaccaacctatcatgctagctttctcattccaccacccctactattgactttaatgccaacaagccaccatgt 37758931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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