View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1339_low_31 (Length: 317)
Name: NF1339_low_31
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 6729529 - 6729372
Alignment:
| Q |
81 |
cagaacctgtgcttgaaccagtccttactcctatatccaacaccacactacctctaacccacacaaactcatcacctttcactggatctgcaacaacccc |
180 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
6729529 |
cagaacctgtgcttgaaccaatccttactcctatatccaacaccacactacctctaacccacacaaactcatcacccttcactagatctgcaacaacccc |
6729430 |
T |
|
| Q |
181 |
attctctacctcaacaaattttattcctttctctacactgttatcacttcatctcact |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
6729429 |
attctctacctcaacaaattttattcttttctctacaccgttatcacttcatcacact |
6729372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University