View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_36 (Length: 294)
Name: NF1339_low_36
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_36 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 71 - 294
Target Start/End: Original strand, 6730603 - 6730826
Alignment:
| Q |
71 |
acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc |
170 |
Q |
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| T |
6730603 |
acaaccaccttattaatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc |
6730702 |
T |
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| Q |
171 |
cctaaatttcaaacaataattaaatggaacttaactacctatttagagcacatagcaccaacacttcagaatgaataagtgtttgatgttacatgtgtct |
270 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6730703 |
cctaaatttcaaacaataaataaatggaacttaactacctatttagagcacatagcaccaacacttcagaatgaataagtgtttgatgttatatgtgtct |
6730802 |
T |
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| Q |
271 |
aatggccaattaatactcatatac |
294 |
Q |
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|||||||||||||||||||||||| |
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| T |
6730803 |
aatggccaattaatactcatatac |
6730826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 71 - 264
Target Start/End: Original strand, 6760265 - 6760456
Alignment:
| Q |
71 |
acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc |
170 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6760265 |
acaaccaccttattgatttctcagtccatgctcgaactgtctttgccattctcacagttgtttcttttttcaattcaagcctcaacaagtttggtggttc |
6760364 |
T |
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| Q |
171 |
cctaaatttcaaacaataattaaatggaacttaactacctatttagagcacatagcaccaacacttcagaatgaataagtgtttgatgttacat |
264 |
Q |
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| T |
6760365 |
cctaaatttcacacaatcaataaatggaacttaactacctattt--agcacatagcaccaacactttagaatgaataagtgtttgatgttacat |
6760456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 6785481 - 6785589
Alignment:
| Q |
71 |
acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
6785481 |
acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcgtagctgtttcttctttcaattccagcctcaacaagtttggcggttc |
6785580 |
T |
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| Q |
171 |
cctaaattt |
179 |
Q |
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||||||||| |
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| T |
6785581 |
cctaaattt |
6785589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 6727644 - 6727752
Alignment:
| Q |
71 |
acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcacagttgtttcttctttcaattcaagcctcaacaagtttggtggttc |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
6727644 |
acaaccaccttattgatttttcaatccatgctcgaactgtctttgccattctcgtagctgtttcttctttcaattccagccttaacaagtttggcggttc |
6727743 |
T |
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| Q |
171 |
cctaaattt |
179 |
Q |
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||||||||| |
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| T |
6727744 |
cctaaattt |
6727752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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