View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_38 (Length: 287)
Name: NF1339_low_38
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 51751957 - 51752199
Alignment:
| Q |
9 |
agcagagataacaggtgcatatgaggaaagcatgaaatggatcctagggtaaggaaccaagttggtttgaaactctgttacatcaacattcagtgctcca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51751957 |
agcagagataacaggtgcatatgaggaaagcatgaaatggatcctagggtaaggaaccaagttggtttgaaactctgttacatcaacatttagtgctcca |
51752056 |
T |
|
| Q |
109 |
tcaaacctcaaagaggcagtgagggatgaaatcacctgggaaaacacatcaaacaaatctcaatatatgttacacaactcaaattcaattactcatcaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51752057 |
tcaaacctcaaagaggcagtgagggatgaaatcacctgggaaaacacatcaaacaaatctcaatatatgttacacaactcaaattcaattactcatcaaa |
51752156 |
T |
|
| Q |
209 |
tctaatcaagtaaacctcaatatttgctacataattcaaatcc |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51752157 |
tctaatcaagtaaacctcaatatttgctacataattcaaatcc |
51752199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 47928087 - 47928224
Alignment:
| Q |
9 |
agcagagataacaggtgcatatgaggaaagcatgaaatggatcctagggtaaggaaccaagttggtttgaaactctgttacatcaacattcagtgctcca |
108 |
Q |
| |
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|||||||||||| || |||||||| ||||||||||||||||| || || || || ||||||||||| || || || || ||||||||||| || || ||| |
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| T |
47928087 |
agcagagataactggagcatatgaagaaagcatgaaatggattctgggatatgggaccaagttggtctggaattcagtcacatcaacattgagagcacca |
47928186 |
T |
|
| Q |
109 |
tcaaacctcaaagaggcagtgagggatgaaatcacctg |
146 |
Q |
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| T |
47928187 |
tcaaacctcaaggaagcagtcaaggatgaaatcacctg |
47928224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 18162542 - 18162407
Alignment:
| Q |
10 |
gcagagataacaggtgcatatgaggaaagcatgaaatggatcctagggtaaggaaccaagttggtttgaaactctgttacatcaacattcagtgctccat |
109 |
Q |
| |
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||||| |||| ||| |||||||||| ||||||||||||| || || | || ||||||| |||||||||| ||| | | ||||||||||| || | ||| |
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| T |
18162542 |
gcagaaataaaaggggcatatgaggtaagcatgaaatgggtcgtatgaaaaagaaccaaattggtttgaagctcattgagatcaacattcactgatgcat |
18162443 |
T |
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| Q |
110 |
caaacctcaaagaggcagtgagggatgaaatcacct |
145 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||| |
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| T |
18162442 |
caaacctcaaagaggtagtgagggatgaaataacct |
18162407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 18306756 - 18306876
Alignment:
| Q |
25 |
gcatatgaggaaagcatgaaatggatcctagggtaaggaaccaagttggtttgaaactctgttacatcaacattcagtgctccatcaaacctcaaagagg |
124 |
Q |
| |
|
|||||||||| ||||||||||||| || || | || ||||||| |||||||||| ||| | | ||||||||||| || | |||||||||||||||||| |
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| T |
18306756 |
gcatatgaggtaagcatgaaatgggtcgtatgaaaatgaaccaaattggtttgaagctcattgagatcaacattcactgatgcatcaaacctcaaagagg |
18306855 |
T |
|
| Q |
125 |
cagtgagggatgaaatcacct |
145 |
Q |
| |
|
||||||||||||||| |||| |
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| T |
18306856 |
tagtgagggatgaaataacct |
18306876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 35669593 - 35669721
Alignment:
| Q |
9 |
agcagagataacaggtgcatatgaggaaagcatgaaatggatcctagggtaaggaaccaagttggtttgaaactctgttacatcaacattcagtgctcca |
108 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| || | ||| || || || | ||||| || ||||| || | ||||||||| | || ||| |
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| T |
35669593 |
agcagagataacaggtgcataagacgaaagcatgaaatgaatacgaggatacggcacaagattggtctggaactcagtaatatcaacattaatagcacca |
35669692 |
T |
|
| Q |
109 |
tcaaacctcaaagaggcagtgagggatga |
137 |
Q |
| |
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||||||||||| |||| ||||||||||| |
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|
| T |
35669693 |
tcaaacctcaacgaggttgtgagggatga |
35669721 |
T |
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