View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_39 (Length: 280)
Name: NF1339_low_39
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 28794879 - 28794694
Alignment:
| Q |
10 |
cacttttgaggtctatgcaggagactttgtagccagaattctccataaggcacctgattttgtaccagcaccaacctcctccacctatgccatgtactaa |
109 |
Q |
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| T |
28794879 |
cacttttgaggtctatgcaagagactttgtagccagaattctccataaggcacctgattttgtaccagcaccaacctcctccacctatgccatgtactaa |
28794780 |
T |
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| Q |
110 |
cacaaagtgctgcttcaaggtaattgttgctgttcctattgaatcaacaccactttcctctctcttaggaatgttgatctcttcat |
195 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28794779 |
cacaaagtgctgcttcaaggtagttcttgctgttcctattgaatcaacaccactttcctctctcttaggaatgttgatctcttcat |
28794694 |
T |
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Back To:
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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 42825251 - 42825358
Alignment:
| Q |
11 |
acttttgaggtctatgcaggagactttgtagccagaattctccataaggcacctgattttgtaccagcaccaacctcctccacctatgccatgtactaac |
110 |
Q |
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|||||| ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
42825251 |
acttttaaggtctatgcatgagactttgtacccagaattctccataaggcacttaattttgtaccagcaccaacctccaccacctatgccatgtactagc |
42825350 |
T |
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| Q |
111 |
acaaagtg |
118 |
Q |
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| T |
42825351 |
acaaagtg |
42825358 |
T |
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