View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_4 (Length: 613)
Name: NF1339_low_4
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 98 - 606
Target Start/End: Original strand, 39411396 - 39411904
Alignment:
| Q |
98 |
aattcctcagaaacaatggatttcctggattttgctgaaccattttcttgtaatattgttccaccccatgattactatctccatcattccctccagaacc |
197 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411396 |
aattcctcagaaacaatggatttcctggattttgttgaaccattttcttgtaatattcttccaccccatgattactatctccatcattccctccagaacc |
39411495 |
T |
|
| Q |
198 |
catggaattataatcaccacctccattccctcctctgcagccacctataccatcaacaccaagtcccttagcaagatacatttctttattaccaaccttt |
297 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39411496 |
catggaattataatcaccacctccattccctccactgcagccacctataccatcaacaccaagtccctttgcaagatacatttctttattaccaaccttt |
39411595 |
T |
|
| Q |
298 |
ccctcctcaccaaaactcaccctgaaaacgctatccttcacttcatcattcaccaccacaccactggcagtactattcagcacactactgaaatcatcat |
397 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411596 |
ccctcctcaccaaaactcaccctgaaaactctatccttcacttcatcattcaccaccacaccactggcagtactattcagcacactactgaaatcatcat |
39411695 |
T |
|
| Q |
398 |
catatccttcatcttcaaaatcagtttcttcttcacgcaagcctgtttgctttgaaagagagaaagatggaatggtctctagtgcgaagcctctttgtct |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411696 |
catatccttcatcttcaaaatcagtttcttcttcacgcaagcctgtttgctttgaaagagagaaagatggaatggtctctagtgcgaagcctctttgtct |
39411795 |
T |
|
| Q |
498 |
cactgaataccttttagaagaagagtccatattgttgttacaactagtggcataggctaagtcttccaagttcccttcagattgaactcttctaatcaac |
597 |
Q |
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| T |
39411796 |
cactgaataccttttagaagaagagtccatattgttgttacaattagtggcataggctaagtcttccaagttcccttcagattgaactcttctaatcaac |
39411895 |
T |
|
| Q |
598 |
cctttgttt |
606 |
Q |
| |
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||||||||| |
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| T |
39411896 |
cctttgttt |
39411904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 98 - 333
Target Start/End: Complemental strand, 39790392 - 39790133
Alignment:
| Q |
98 |
aattcctcagaaacaatggatttcctggattttgctgaaccattttcttgtaatattgttccaccccatg---attactatctccatcattccctccaga |
194 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |
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| T |
39790392 |
aattcctcaagaacaaaggatttcctggattttgctgaaccattttcttgtaatattgttccaccccatgattattattatctccatcattcctttcaga |
39790293 |
T |
|
| Q |
195 |
acccatggaattataatcaccacctccatt---ccctcctctgcag---ccacctatacc---------------atcaacaccaagtcccttagcaaga |
273 |
Q |
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| T |
39790292 |
atccatagaattataatcaccacctccattacctcctcctctgcagccaccacctatgccatcaccaccacagaaatcaacaccaagtccctttgcaaga |
39790193 |
T |
|
| Q |
274 |
tacatttctttattaccaacctttccctcctcaccaaaactcaccctgaaaacgctatcc |
333 |
Q |
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||||| || |||| ||||| || |||||||||| |||||||||||||| |||| |||||| |
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| T |
39790192 |
tacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatcc |
39790133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 424 - 592
Target Start/End: Complemental strand, 39790045 - 39789856
Alignment:
| Q |
424 |
tcttcttcacgcaagcctgtttgctttgaaagagagaaagatggaatggtctctagtgcgaagcctct---ttgtctcactgaataccttttagaagaag |
520 |
Q |
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||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||| || ||||| |||||| |||||||||| |||||||||| |
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| T |
39790045 |
tcttcttcacgcaagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaag |
39789946 |
T |
|
| Q |
521 |
agtccat------------------attgttgttacaactagtggcataggctaagtcttccaagttcccttcagattgaactcttctaa |
592 |
Q |
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| T |
39789945 |
agtccatataacttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaa |
39789856 |
T |
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