View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_43 (Length: 265)
Name: NF1339_low_43
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_43 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 28 - 265
Target Start/End: Complemental strand, 25357506 - 25357269
Alignment:
| Q |
28 |
caagtacagcgaaaaagactaatacattttgggtgaggtcactacgtccgatgcatacttgtggaatggtgttaaatttcaatagttccaggtctaagtg |
127 |
Q |
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| T |
25357506 |
caagtacagcgaaaaagactaatacattttgggtgaggtcactacgtccgatgcatacttgtggaatggtgttaaatttcaatagttccaggtctaagtg |
25357407 |
T |
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| Q |
128 |
ggttaaggaagtcttggttaaacacaatatcaatcaagaacctaagaagagggtaattttattgttttattctgctaaattaattgttcaactttgtttt |
227 |
Q |
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| T |
25357406 |
ggttaaggaagtcttggttaaacacaatatcaatcaagaacctaacaagagggtaattttattgttttattctgctaaattaattgttcttctttgtttt |
25357307 |
T |
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| Q |
228 |
tgtgtttgttttatctaacttgataatgtgtttgttat |
265 |
Q |
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| T |
25357306 |
tgtgtttgttttatctaacttgctaatgtgcttgttat |
25357269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 51 - 265
Target Start/End: Complemental strand, 25352809 - 25352595
Alignment:
| Q |
51 |
acattttgggtgaggtcactacgtccgatgcatacttgtggaatggtgttaaatttcaatagttccaggtctaagtgggttaaggaagtcttggttaaac |
150 |
Q |
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| T |
25352809 |
acatttagggtgacgtcactatgcccgatgcatacttgtggaatggtgttaaatttcaagagttccaggtctaagtgggttgcgaaagtcttggttaaac |
25352710 |
T |
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| Q |
151 |
acaatatcaatcaagaacctaagaagagggtaattttattgttttattctgctaaattaattgttcaactttgtttttgtgtttgttttatctaacttga |
250 |
Q |
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| T |
25352709 |
acaatatcaaacaagaacctaaaaagagggtaattttatagttttattctgctaaattaattgttgttttttgtttttgtgttagttttatctaacttgc |
25352610 |
T |
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| Q |
251 |
taatgtgtttgttat |
265 |
Q |
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| T |
25352609 |
taatgtgtttgttat |
25352595 |
T |
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