View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_48 (Length: 259)
Name: NF1339_low_48
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 11402851 - 11402976
Alignment:
| Q |
125 |
gtggaattttcaagtctttgtcatgaccgcaaa-tggtctcaaatgatttttccaaatcatgacctctttatctccttttttgaggaaatgacctcttat |
223 |
Q |
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| T |
11402851 |
gtggaattttcaagtctttgtcatgaccgcaaaatggtctcaaatgatttttccaaatcatgacctctttatctccttttttgaggaaatgacctcttat |
11402950 |
T |
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| Q |
224 |
ctcatactcatatggtgtgttctctg |
249 |
Q |
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| T |
11402951 |
ctcatactcatatggtgtgttctctg |
11402976 |
T |
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