View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_5 (Length: 518)
Name: NF1339_low_5
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 10690517 - 10690116
Alignment:
| Q |
8 |
agattattcttgagaccaattctctgcatggaaaaagtagcagcacctccaagttctcatggaatttcttccatggttaaaagaaagacaccatcagaac |
107 |
Q |
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| T |
10690517 |
agattattcttgagaccaattctctgcatggaaaaagtagcagcacctccaagttctcatggaatttcttccatggttaaaagaaagacaccatcagaac |
10690418 |
T |
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| Q |
108 |
ttaggggagagcagttgaagcgggaaaatgttgaagacctcactgatgatgatg---atgaggtttctccctctgctggttccgcgaaagatacacaact |
204 |
Q |
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| T |
10690417 |
ttaggggagagcagttgaagcgggaaagtgttgaagacctcactgatgatgatgatgatgaggtttctccctctgctggttccgcgaaagatacacaact |
10690318 |
T |
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| Q |
205 |
aattggtgaagtattttctgcgaaaaagtccatgtttagaattgtatctaaggagcaaactagtagtaatctaaagaatgatgccaaaggccaggctggt |
304 |
Q |
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| T |
10690317 |
aattggtgaagtattttctgcgaaaaagtccatgtttagaattgtatctaaggagcaaactagtagtaatctaaataa---------------------t |
10690239 |
T |
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| Q |
305 |
gaaaccaatgaaaagttccttagtgttgctgacctttcatcatcagc---tgttggtagatcttctggaggagcagcagcagcaggtatcgacatgggac |
401 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || ||||||| |||||||||| |
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| T |
10690238 |
gaaagcaatgaaaagttccttagtgttgctgacctttcatcatcagctgttgttggtagatcttctggagcagcagcaacatcaggtattgacatgggac |
10690139 |
T |
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| Q |
402 |
aagcattgaaaggactagcctca |
424 |
Q |
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| T |
10690138 |
aagcattgaaaggactagcctca |
10690116 |
T |
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